Bss120 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL: Bss120 (Bone structure and strength QTL 120) Rattus norvegicus

Symbol: Bss120
Name: Bone structure and strength QTL 120
RGD ID: 11528636
Trait: femur morphology trait   (VT:0000559)    
Measurement Type: femoral neck width   (CMO:0001695)    
LOD Score: 8.55
P Value: 2.7E-9
Variance: Not Available
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01781,940,459 - 82,621,764RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01783,682,542 - 84,358,722RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.41788,999,875 - 89,799,839RGD_MAPPER_PIPELINERGSC3.4
Cross Type: Not Available
Strains Crossed: NAft:HS 

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
NAft:HS  (IEA)


References - curated
# Reference Title Reference Citation
1. Fine mapping of bone structure and strength QTLs in heterogeneous stock rat. Alam I, etal., Bone. 2015 Dec;81:417-26. doi: 10.1016/j.bone.2015.08.013. Epub 2015 Aug 19.


Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
Position Markers

Flank 1: (rs197277061)
Rat AssemblyChrPosition (strand)Source
Rnor_6.01781,940,459 - 81,940,459RGD
Rnor_5.01783,682,542 - 83,682,542RGD
RGSC_v3.41788,999,875 - 88,999,875RGD
Peak: (rs198863294)
Rat AssemblyChrPosition (strand)Source
Rnor_6.01033,950,063 - 33,950,063RGD
Rnor_5.01033,752,887 - 33,752,887RGD
RGSC_v3.41789,388,214 - 89,388,214RGD
Flank 2: (rs197861804)
Rat AssemblyChrPosition (strand)Source
Rnor_6.01782,621,764 - 82,621,764RGD
Rnor_5.01784,358,722 - 84,358,722RGD
RGSC_v3.41789,799,839 - 89,799,839RGD

Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_general number of animals used: 1524 HS rats (728 male, 796 female) were used. 11528619
qtl_general measurement method: Rats on a standard diet were euthanized at 17 to 20 weeks of age, and left femurs were measured using digital calipers (Mitutoyo, Aurora, IL). 11528619