Bss116 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL: Bss116 (Bone structure and strength QTL 116) Rattus norvegicus

Symbol: Bss116
Name: Bone structure and strength QTL 116
RGD ID: 11528628
Trait: femur morphology trait   (VT:0000559)    
Measurement Type: femur length   (CMO:0000442)    
LOD Score: 6.46
P Value: 3.8E-7
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01045,114,283 - 45,744,081RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01044,871,972 - 45,499,761RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.41045,699,961 - 47,100,098RGD_MAPPER_PIPELINERGSC3.4
Cross Type: Not Available
Strains Crossed:



Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement
femur length  (IDA)

Experimental Condition

Measurement Method

Vertebrate Trait

References

References - curated
# Reference Title Reference Citation
1. Fine mapping of bone structure and strength QTLs in heterogeneous stock rat. Alam I, etal., Bone. 2015 Dec;81:417-26. doi: 10.1016/j.bone.2015.08.013. Epub 2015 Aug 19.

Region

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
Position Markers

Flank 1: (rs198350962)
Rat AssemblyChrPosition (strand)Source
Rnor_6.01045,744,081 - 45,744,081RGD
Rnor_5.01045,499,761 - 45,499,761RGD
RGSC_v3.41045,699,961 - 45,699,961RGD
Peak: (rs105872339)
Rat AssemblyChrPosition (strand)Source
Rnor_6.01046,639,495 - 46,639,495RGD
Rnor_5.01046,394,355 - 46,394,355RGD
RGSC_v3.41046,530,592 - 46,530,592RGD
Flank 2: (rs105202638)
Rat AssemblyChrPosition (strand)Source
Rnor_6.01045,114,283 - 45,114,283RGD
Rnor_5.01044,871,972 - 44,871,972RGD
RGSC_v3.41047,100,098 - 47,100,098RGD


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_general number of animals used: 1524 HS rats (728 male, 796 female) were used. 11528619
qtl_general measurement method: Rats on a standard diet were euthanized at 17 to 20 weeks of age, and left femurs were measured using digital calipers (Mitutoyo, Aurora, IL). 11528619