Bss113 QTL Report (Rattus norvegicus) - Rat Genome Database

Send us a Message

Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

QTL: Bss113 (Bone structure and strength QTL 113) Rattus norvegicus

Symbol: Bss113
Name: Bone structure and strength QTL 113
RGD ID: 11528620
Trait: femur morphology trait   (VT:0000559)    
Measurement Type: femoral neck width   (CMO:0001695)    
LOD Score: 9.75
P Value: 1.7E-10
Variance: Not Available
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0312,236,221 - 15,217,668RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0317,570,016 - 20,527,281RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.4312,200,198 - 14,999,876RGD_MAPPER_PIPELINERGSC3.4
Cross Type: Not Available
Strains Crossed: NAft:HS 

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
NAft:HS  (IEA)


References - curated
# Reference Title Reference Citation
1. Fine mapping of bone structure and strength QTLs in heterogeneous stock rat. Alam I, etal., Bone. 2015 Dec;81:417-26. doi: 10.1016/j.bone.2015.08.013. Epub 2015 Aug 19.


Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
Position Markers

Flank 1: (rs106758500)
Rat AssemblyChrPosition (strand)Source
Rnor_6.0312,236,221 - 12,236,221RGD
Rnor_5.0317,570,016 - 17,570,016RGD
RGSC_v3.4312,200,198 - 12,200,198RGD
Peak: (rs106984956)
Rat AssemblyChrPosition (strand)Source
Rnor_6.0313,294,746 - 13,294,746RGD
Rnor_5.0318,622,898 - 18,622,898RGD
RGSC_v3.4313,253,530 - 13,253,530RGD
Flank 2: (rs106987644)
Rat AssemblyChrPosition (strand)Source
Rnor_6.0315,217,668 - 15,217,668RGD
Rnor_5.0320,527,281 - 20,527,281RGD
RGSC_v3.4314,999,876 - 14,999,876RGD

Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_general number of animals used: 1524 HS rats (728 male, 796 female) were used. 11528619
qtl_general measurement method: Rats on a standard diet were euthanized at 17 to 20 weeks of age, and left femurs were measured using digital calipers (Mitutoyo, Aurora, IL). 11528619