Stl34 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Stl34 (Serum triglyceride level QTL 34) Rattus norvegicus

Symbol: Stl34
Name: Serum triglyceride level QTL 34
RGD ID: 10450854
Previously known as: LDL-TG
Trait: blood LDL triglyceride amount   (VT:0010699)    
Measurement Type: blood lipoprotein triglyceride level   (CMO:0002685)    
LOD Score: 3.5
P Value: 0.05
Variance: 53.0
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0121 - 22,853,017RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01220,239,828 - 24,861,467RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.41216,601,685 - 20,718,374RGD_MAPPER_PIPELINERGSC3.4
Cross Type: Not Available
Strains Crossed: SHR.BN-(D8Mit5-D8Mgh6)/Ipcv BXH2/Cub 



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain

References

References - curated
# Reference Title Reference Citation
1. Genomic determinants of triglyceride and cholesterol distribution into lipoprotein fractions in the rat. Hodulova M, etal., PLoS One. 2014 Oct 8;9(10):e109983. doi: 10.1371/journal.pone.0109983. eCollection 2014.

Region

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
Position Markers

Flank 1: (D12Wox9)
Rat AssemblyChrPosition (strand)Source
Rnor_5.01220,239,829 - 20,239,932NCBI
Rnor_5.01205,564,366 - 205,564,501NCBI
Rnor_5.01220,239,828 - 20,239,932NCBI
Rnor_5.01205,564,367 - 205,564,501NCBI
RGSC_v3.41186,388,833 - 186,388,966UniSTS
RGSC_v3.41216,601,685 - 16,601,788RGD
RGSC_v3.41186,388,832 - 186,388,966RGD
RGSC_v3.41216,601,686 - 16,601,788UniSTS
RGSC_v3.11186,538,713 - 186,538,847RGD
Celera1217,843,923 - 17,844,025UniSTS
Celera1179,400,694 - 179,400,827UniSTS
RH 3.4 Map12241.0UniSTS
Cytogenetic Map1q36UniSTS
Flank 2: (D12Got42)
Rat AssemblyChrPosition (strand)Source
Rnor_6.01222,852,857 - 22,853,017NCBI
Rnor_5.01224,861,307 - 24,861,467UniSTS
RGSC_v3.41220,718,214 - 20,718,374UniSTS
RGSC_v3.41220,718,213 - 20,718,374RGD
RGSC_v3.11220,707,776 - 20,707,936RGD
Celera1221,586,353 - 21,586,513UniSTS
RH 3.4 Map12288.2UniSTS
RH 3.4 Map12288.2RGD
RH 2.0 Map12209.1RGD
Cytogenetic Map12q12UniSTS


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_general 42 genes are present in this region 10402111
qtl_general number of animals used: 8-13 males, 4 month old from 15 PXO recombinant inbred strains 10402111
qtl_general software used: STATISTICA 10 CZ; ANOVA 10402111
qtl_general measurement method: 4 month old male rats were fed high-sucrose diet for 1 week; blood samples were taken from the tail vein after overnight fasting, triglyceride in lipoprotein fractions were determined by HPLC 10402111
qtl_general confidence interval: 17,168-20,718 Kbp 10402111