Scl79 QTL Report (Rattus norvegicus) - Rat Genome Database

Send us a Message



 Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap)  (beta) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer) Overgo Probe Designer
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
QTL Registration

QTL: Scl79 (Serum cholesterol level QTL 79) Rattus norvegicus

Symbol: Scl79
Name: Serum cholesterol level QTL 79
RGD ID: 10450828
Previously known as: HDL-C size
Trait: blood HDL cholesterol amount   (VT:0000184)    
Measurement Type: blood low density lipoprotein cholesterol level   (CMO:0000053)    
LOD Score: 3.5
P Value: 0.001
Variance: 51.0
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2789,867,376 - 101,773,158RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0798,200,188 - 111,043,530RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0798,803,655 - 110,975,995RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.4795,054,499 - 107,428,439RGD_MAPPER_PIPELINERGSC3.4
Cross Type: Not Available
Strains Crossed: SHR.BN-(D8Mit5-D8Mgh6)/Ipcv BXH2/Cub 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain

References

References - curated
# Reference Title Reference Citation
1. Genomic determinants of triglyceride and cholesterol distribution into lipoprotein fractions in the rat. Hodulova M, etal., PLoS One. 2014 Oct 8;9(10):e109983. doi: 10.1371/journal.pone.0109983. eCollection 2014.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1307545Anxa13annexin A1378988435689936907Rat
1586304Fam91a1family with sequence similarity 91, member A178996955890007546Rat
7710569Zcchc9-ps2zinc finger CCHC-type containing 9, pseudogene 278999776890000881Rat
41368912LOC120093660uncharacterized LOC12009366079004013990048215Rat
1564703Fer1l6fer-1-like family member 679009356790216907Rat
41210892LOC120093878keratin-associated protein 10-4-like79031397690317422Rat
1563224Tmem65transmembrane protein 6579033699790378930Rat
41009218LOC120093661uncharacterized LOC12009366179037339690375705Rat
41259774LOC120093985U1 spliceosomal RNA79037444990374604Rat
9379903LOC103690428uncharacterized LOC10369042879038484590389902Rat
1562739RGD1562739similar to STELLA79040283290404317Rat
1307127Trmt12tRNA methyltransferase 1279041784690419472Rat
1306670Rnf139ring finger protein 13979043972690450911Rat
1585145Tatdn1TatD DNase domain containing 179045102590481000Rat
1307114Ndufb9NADH:ubiquinone oxidoreductase subunit B979048101390487360Rat
1309883Mtss1MTSS I-BAR domain containing 179048875190628007Rat
41110337LOC120093662uncharacterized LOC12009366279054245290549865Rat
3755Sqlesqualene epoxidase79086797390883623Rat
1564420Washc5WASH complex subunit 579088433390936118Rat
1305156Nsmce2NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase79093611291173435Rat
11452395LOC108351498uncharacterized LOC10835149879117594191181619Rat
11483376LOC108351497uncharacterized LOC10835149779119165191198960Rat
1584048LOC690120hypothetical protein LOC69012079120524991206171Rat
621596Trib1tribbles pseudokinase 179120657991213126Rat
41063713LOC120093663uncharacterized LOC12009366379124652491351728Rat
1560979Rps12-ps1ribosomal protein S12, pseudogene79126764591268052Rat
41035867LOC120094053U6 spliceosomal RNA79137067191370777Rat
7533260LOC102551999uncharacterized LOC10255199979139760591407240Rat
40934539LOC120093664uncharacterized LOC12009366479142761691449462Rat
41108340Pgam1-ps4phosphoglycerate mutase 1, pseudogene 479148702691487671Rat
11458799LOC10835149960S ribosomal protein L15 pseudogene79151969791520695Rat
1564901LOC500876LOC50087679161629791618030Rat
41393725LOC120093914U6 spliceosomal RNA79169334391693442Rat
7750896LOC102552490uncharacterized LOC10255249079171694691768010Rat
7665134LOC102552316uncharacterized LOC10255231679174741291753435Rat
1563100RGD1563100similar to KIAA008979194025891942125Rat
41261377LOC120094056U6 spliceosomal RNA79206798292068087Rat
41222771LOC120093879keratin-associated protein 5-3-like79208875792089368Rat
41311443LOC120093988small nucleolar RNA SNORA1779227354192273672Rat
1564515RGD1564515similar to alpha 1B-glycoprotein79231493092318652Rat
41329869Lsm6-ps1U6 small nuclear RNA and mRNA degradation associated, pseudogene 179232238592338965Rat
1563390LOC500877Ab1-15279233907892384009Rat
1562236Lratd2LRAT domain containing 279237671392387045Rat
1359428LOC362921Ac2-22479244426892464745Rat
7637212Ghitm-ps1growth hormone inducible transmembrane protein, pseudogene 179245969592460814Rat
69417A1bgalpha-1-B glycoprotein79249393492498460Rat
41157576LOC120093667uncharacterized LOC12009366779261620892664552Rat
41366091LOC120093668uncharacterized LOC12009366879286029092892964Rat
41070538LOC120093670uncharacterized LOC12009367079299943793076507Rat
9295089LOC103692925uncharacterized LOC10369292579303137893285485Rat
41030570LOC120093672uncharacterized LOC12009367279309324193096469Rat
40975977LOC120093671uncharacterized LOC12009367179323832593252519Rat
40931067Gcm1-ps1glial cells missing transcription factor 1, pseudogene 179326131793262492Rat
41391831LOC120093673uncharacterized LOC12009367379331604693325937Rat
41336997LOC120094054U6 spliceosomal RNA79336014193360247Rat
7683154LOC102547509uncharacterized LOC10254750979346563393487041Rat
41400961LOC120093860phosphomannomutase 1-like79348989393490745Rat
3130MycMYC proto-oncogene, bHLH transcription factor79359370593598633Rat
6496716Pvt1Pvt1 oncogene79365624993879938Rat
41226657LOC120093674uncharacterized LOC12009367479377016193787074Rat
41375551LOC120094019U6atac minor spliceosomal RNA79424665794246771Rat
41108830LOC120094009small nucleolar RNA SNORA1779445709694457229Rat
40959783LOC120093675uncharacterized LOC12009367579451391194565757Rat
7543030LOC102548035uncharacterized LOC10254803579461920794701950Rat
7719983LOC102548624uncharacterized LOC10254862479520888895230371Rat
1587369Idh3b-ps1isocitrate dehydrogenase (NAD(+)) 3 non-catalytic subunit beta, pseudogene 179530124495302379Rat
9115372LOC103692910glyceraldehyde-3-phosphate dehydrogenase pseudogene79545070495451612Rat
1308989Gsdmcgasdermin C79559401595606106Rat
1359449RGD1359449gasdermin domain containing protein RGD135944979562005295630546Rat
1307697CyribCYFIP related Rac1 interactor B79563387695760588Rat
41205814LOC120093678uncharacterized LOC12009367879568024995697329Rat
41339457LOC120093676uncharacterized LOC12009367679569740995701254Rat
41144591LOC120093677uncharacterized LOC12009367779570190295705551Rat
1307379Asap1ArfGAP with SH3 domain, ankyrin repeat and PH domain 179578613096093111Rat
2036Adcy8adenylate cyclase 879641731096665911Rat
1598175LOC503156similar to Proteasome subunit beta type 3 (Proteasome theta chain) (Proteasome chain 13) (Proteasome component C10-II)79670657996707280Rat
41390682LOC120093969small nucleolar RNA SNORA4879682511896825259Rat
1594487Hspa8-ps9heat shock protein family A (Hsp70) member 8, pseudogene 979690175996904484Rat
41211077LOC120093679uncharacterized LOC12009367979714556297197618Rat
1305976Efr3aEFR3 homolog A79755267797633369Rat
1593441Oc90otoconin 9079763589097669416Rat
15008789AABR07058254.1HERV-H LTR-associating 179767094697711308Rat
69222Kcnq3potassium voltage-gated channel subfamily Q member 379773021998025652Rat
11444634Trnak-cuu10transfer RNA lysine (anticodon CUU) 1079805030898050380Rat
1559937Dnaaf11dynein axonemal assembly factor 1179814152598245906Rat
41066261Rabggta-ps2Rab geranylgeranyltransferase subunit alpha, pseudogene 279824576698274427Rat
1593414Tmem71transmembrane protein 7179827697598323161Rat
1560141Phf20l1PHD finger protein 20-like 179833058098396526Rat
41336226LOC120094027U2 spliceosomal RNA79839917098399344Rat
3848Tgthyroglobulin79841829398603210Rat
631373Slasrc-like adaptor79853443198584810Rat
69431Ccn4cellular communication network factor 479864523898677253Rat
1307303Ndrg1N-myc downstream regulated 179868448798725869Rat
7632859LOC102550354uncharacterized LOC10255035479879959198823018Rat
1309373St3gal1ST3 beta-galactoside alpha-2,3-sialyltransferase 179884527098913409Rat
7563506LOC102555324MLV-related proviral Env polyprotein-like79920971699211726Rat
7607396LOC102550565uncharacterized LOC10255056579925710499287329Rat
1592251Hypk-ps1huntingtin interacting protein K, pseudogene 179941289599413276Rat
1594370Nop2-ps3NOP2 nucleolar protein, pseudogene 379944663599449266Rat
1310886Zfatzinc finger and AT hook domain containing799886954100054288Rat
40928179LOC120093680uncharacterized LOC1200936807100100814100116285Rat
7751266LOC102551574uncharacterized LOC1025515747100102553100159947Rat
2325392Mir30bmicroRNA 30b7100132589100132675Rat
2325589Mir30dmicroRNA 30d7100136391100136472Rat
1564548RGD1564548similar to H3 histone, family 3B7100253160100257870Rat
41069368Calm1-ps1calmodulin 1, pseudogene 17100467800100468244Rat
41057908Tox4-ps1TOX high mobility group box family member 4, pseudogene 17100628756100635603Rat
620921Khdrbs3KH RNA binding domain containing, signal transduction associated 37100837707100995644Rat
11479082LOC108351507uncharacterized LOC1083515077100977899100982865Rat
1585982R3hdm2-ps2R3H domain containing 2, pseudogene 27101184273101187188Rat
41189194LOC120093889uncharacterized LOC1200938897101218098101248598Rat
41311854LOC120094008small nucleolar RNA SNORA177101325223101325349Rat
41089210LOC120093934U7 small nuclear RNA7101328875101328934Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10935D7Wox1412779359564793595780Ratregion
10936D7Arb579359562793595833Ratregion
10937D7Wox1515579359562093595781Ratregion
10938D7Wox2913579359563393595754Ratregion
10939D7Mit2720679359563193595843Ratregion
33969D7Mit422379481108594811326Ratregion
34555D7Mgh614079141244491412594Ratregion
34713D7Mgh1614079125631191256547Ratregion
33749D7Mit325679973595699736220Ratregion
36015D7Rat2115579128113091281285Ratregion
35264D7Rat1815279801139698011544Ratregion
36932D7Rat1713579479587794796025Ratregion
37710D7Rat19018479032403890324226Ratregion
37814D7Rat1002137100865992100866189Ratregion
36442D7Rat2015778986737689867533Ratregion
36661D7Rat151717101772987101773158Ratregion
35110D7Rat1417879609007796090246Ratregion
35841D7Rat1917679324212393242280Ratregion
39702D7Rat16011979350828593508404Ratregion
40036D7Rat1371757100005580100005753Ratregion
40348D7Rat14016278989811689898272Ratregion
39058D7Rat532197100874472100874685Ratregion
39468D7Rat1591087100963583100963703Ratregion
42209D7Arb1319379747473097474932Ratregion
42213D7Arb1522179141238991412612Ratregion
42836D7Rat20220279113987691140102Ratregion
42342D7Rat23116479075610990756271Ratregion
42343D7Rat21824979588575695886004Ratregion
40900D7Rat13422979841863998418864Ratregion
44282D7Got7817079844989898450068Ratregion
44283D7Got851437100006584100006727Ratregion
44284D7Got8123579796087097961107Ratregion
44285D7Got822377100749587100749814Ratregion
44286D7Got861497101283261101283410Ratregion
44288D7Got7520279273463492734836Ratregion
44289D7Got7211879083629190836410Ratregion
44290D7Got7320779099577390995980Ratregion
44292D7Got7120179130026791300468Ratregion
60589D7Got7019079631961696319806Ratregion
60590D7Got7918379992957099929753Ratregion
66593D7Mco120179973598299736187Ratregion
1631395D7Got2481677100749627100749784Ratregion
1638745D7Got25921379173768291737895Ratregion
1638909D7Wox4221179125631191256522Ratregion
7193132MYC29079359646193597750Ratregion
7192489Myc28079359599893596278Ratregion
7205758stSG6244665587101076225101076783Ratregion
7206488UniSTS:54663289979666502896665927Ratregion
5036490Sla9679853618598536281Ratregion
5035506EST3C713079045021790450347Ratregion
5031392PMC156147P114379359589493596037Ratregion
5028905RH14277026779102333191023598Ratregion
5026942RH13412618179120535491205535Ratregion
5029607BF38623415179891015498910305Ratregion
5032593RH1345781947100995253100995447Ratregion
5029941BF40003513579796386097963995Ratregion
5027489AW0608689279641752496417616Ratregion
5028173D15Mit17079359563293595781Ratregion
5025732RH12944618079359827293598452Ratregion
5033719RH1398662147100120563100120777Ratregion
5028567C7689123279763190297632134Ratregion
5028567C7689123279763190297632134Ratregion
5051306RH1264518579563577195635956Ratregion
5053667RH14278113879387820593878343Ratregion
5056055RH14415716879773071297730880Ratregion
5051895RH9472020079359843893598638Ratregion
5054349RH14317310279772520797725309Ratregion
5057500AI03093910179839431998394420Ratregion
5055209RH14366919179120664091206831Ratregion
5054869RH14347226879366373693664004Ratregion
5058720BE10238017679773059997730775Ratregion
5056113RH14419020179053282490533025Ratregion
5059810BE09795020479000218690002390Ratregion
5059862BF40000522079062253490622754Ratregion
5058306BF38699715479772150297721656Ratregion
5050142RH13388618979086843590868624Ratregion
5050208RH13392420579048923990489444Ratregion
5043728RH13019318679868453998684725Ratregion
5043846RH13026120579868457198684776Ratregion
5045952RH13147420379641534696415549Ratregion
5041698RH12900720879000724990007457Ratregion
5044594RH13069321779836115198361368Ratregion
5046376RH13171720379868753998687742Ratregion
5045420RH13116819379578790095788093Ratregion
5048106RH13271121879853456798534785Ratregion
5048322RH13283621179882230698822517Ratregion
5042020RH12919218679048880890488994Ratregion
5048562RH13297519879839615298396350Ratregion
5041258RH12875315479115841291158566Ratregion
5043738RH13019821179088336390883574Ratregion
5043746RH13020320379839378698393989Ratregion
5073922RH13771614879003330890033456Ratregion
5080622RH14168618379565078695650969Ratregion
5077868RH14000618379576251695762699Ratregion
5079738RH14117520379853518498535387Ratregion
5079804RH14121321079827776498277974Ratregion
5079900RH14126720979944667399446882Ratregion
5079900RH14126720979944667399446882Ratregion
5080058RH14135918179041913690419317Ratregion
5078926RH14063218079433522094335400Ratregion
5080198RH14144120479881187498812087Ratregion
5079148RH14076316279772520197725363Ratregion
5079312RH14090918379884536698845549Ratregion
5073486RH13746420079033787290338072Ratregion
5072438RH13684915379033637590336528Ratregion
5072462RH13686318179884536698845547Ratregion
5071696RH13523119579988705499887249Ratregion
5061762AW53327122079837433098374550Ratregion
5067506AU04770316879602792496028001Ratregion
5067590AU04763721379295591392956126Ratregion
5067726AU04757324379031844290318681Ratregion
5068626AU04703112079208092092081049Ratregion
5068634AU0470272437101569654101569907Ratregion
5069074AU04674117479773653697736823Ratregion
5069074AU04674117479773664997736823Ratregion
5069222AU0466387879324205193242129Ratregion
5069312AU04658129679269776692698057Ratregion
5060408BE09801518779089012690890313Ratregion
5060570BE11041017379988750299887675Ratregion
5063546BE10777115079082217090822320Ratregion
5063744BF40496724479104380391044047Ratregion
5065602BF40600620579587951695879721Ratregion
5062638BF40363616779762639697626563Ratregion
5063242BI30156918379526177395261956Ratregion
5063290BI30167319379758462297584815Ratregion
5087436PMC165967P540879359619593596603Ratregion
5082643BE1199141647100839897100840061Ratregion
5082697BF41666519979800238098002579Ratregion
5087434PMC165967P432379359285293593175Ratregion
5087438PMC165967P643079359788793598317Ratregion
5089153AU04898610779586315995863192Ratregion
5083463BE10011918179121335191213532Ratregion
5089487AU04918529479679729596797589Ratregion
5081649BE11785715079867386298674012Ratregion
5090279AU0496561777101072720101072897Ratregion
5087211AW5241289079049032490490414Ratregion
5082321BE11918318779107738691077573Ratregion
5080758RH14176519079128429491284484Ratregion
5082973BF39052620079787758197877781Ratregion
5083093BF3907951507100603593100603743Ratregion
5134360D7Uwm262777100132762100133039Ratregion
5503360D4Mon418979686241696862505Ratregion
5503228UniSTS:23730420879238638092386588Ratregion
5507680Hspa893179690178296902713Ratregion
5506987fd54e08.x1116879031757790318746Ratregion
5501137PMC148819P429079359764593597935Ratregion
5501317ECD1472926479615406496154328Ratregion
5501149PMC150726P940379359600393596406Ratregion
5501277PMC187450P1079359562993596103Ratregion
5501556G1598712179359590393596024Ratregion
5505165Trib124879121390691214154Ratregion
5501710MYC20479359620293596406Ratregion
5506033UniSTS:49822942479578811895788542Ratregion
5502048MARC_26128-26129:1030370563:115679530195395302102Ratregion
Position Markers

Flank 1: (D7Rat20)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2789,867,376 - 89,867,533 (+)MAPPER
Rnor_6.0798,200,188 - 98,200,344NCBI
Rnor_5.0798,803,655 - 98,803,811UniSTS
RGSC_v3.4795,054,500 - 95,054,656UniSTS
RGSC_v3.4795,054,499 - 95,054,656RGD
RGSC_v3.1795,088,730 - 95,088,886RGD
Celera786,638,444 - 86,638,600UniSTS
RH 3.4 Map7652.52RGD
RH 3.4 Map7652.52UniSTS
RH 2.0 Map7545.1RGD
SHRSP x BN Map752.31RGD
Flank 2: (D7Rat15)
Rat AssemblyChrPosition (strand)Source
mRatBN7.27101,772,987 - 101,773,158 (+)MAPPER
Rnor_6.07111,043,360 - 111,043,530NCBI
Rnor_5.07110,975,825 - 110,975,995UniSTS
RGSC_v3.47107,428,268 - 107,428,439RGD
RGSC_v3.47107,428,269 - 107,428,439UniSTS
RGSC_v3.17107,462,499 - 107,462,669RGD
Celera798,242,639 - 98,242,803UniSTS
RH 3.4 Map7694.6UniSTS
RH 3.4 Map7694.6RGD
RH 2.0 Map7536.9RGD
SHRSP x BN Map757.9199RGD
FHH x ACI Map748.9699RGD


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)7946224698011544Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)741333674119109060Rat
1358361Sradr5Stress Responsive Adrenal Weight QTL 55.55adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)743747012108555253Rat
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)743747012135012528Rat
1300149Cm6Cardiac mass QTL 64.09heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)743747099102228765Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)744421311118198041Rat
61428Scl3Serum cholesterol level QTL 33.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)74486753389867533Rat
738030Anxrr8Anxiety related response QTL 84.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)74659007091590070Rat
2293696Bmd32Bone mineral density QTL 325.10.0001femur strength trait (VT:0010010)femoral neck polar moment of inertia (CMO:0001670)74765143992651439Rat
2293707Bss32Bone structure and strength QTL 327.640.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)74765143992651439Rat
2300178Bmd54Bone mineral density QTL 545.30.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)74765143992651439Rat
2293644Bmd29Bone mineral density QTL 295.40.0001femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)74765143992651439Rat
2293667Bss42Bone structure and strength QTL 427.250.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra cross-sectional area (CMO:0001689)74765143992651439Rat
2293678Bss24Bone structure and strength QTL 246.710.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)74765143992651439Rat
2293685Bmd21Bone mineral density QTL 214.20.0003femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)74765143992651439Rat
1300151Bp181Blood pressure QTL 1813.36arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)753612714103945643Rat
2317035Aia16Adjuvant induced arthritis QTL 162.71joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)759238038104238038Rat
1298528Bp169Blood pressure QTL 1690.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)761074194106074194Rat
1559283Emca4Estrogen-induced mammary cancer QTL 43.7mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)762004452101773158Rat
1576303Ept7Estrogen-induced pituitary tumorigenesis QTL 73.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)762004452101773158Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)764002457135012528Rat
2316947Rf58Renal function QTL 587.8kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)768938720113886318Rat
2316952Pur22Proteinuria QTL 225.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)768938720113886318Rat
2316955Stl24Serum triglyceride level QTL 247.1blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)768938720113886318Rat
631540Bw9Body weight QTL 94.5body mass (VT:0001259)body weight (CMO:0000012)769736226117455174Rat
1357338Stl17Serum triglyceride level QTL 173.23blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)769736356112729554Rat
634331Pia17Pristane induced arthritis QTL 174.7joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)773829340130221005Rat
7411654Foco25Food consumption QTL 259.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)775918751120918751Rat
7411607Foco15Food consumption QTL 150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)775918751120918751Rat
724537Niddm52Non-insulin dependent diabetes mellitus QTL 520.02blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)78022129993595843Rat
1641908Teswt1Testicular weight QTL 13.28testis mass (VT:1000644)both testes wet weight (CMO:0000175)78022129994811326Rat
631529Tls2T-lymphoma susceptibility QTL 200.001thymus integrity trait (VT:0010555)percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)780221299109401111Rat
1331746Kidm9Kidney mass QTL 93.934kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)780221299112308525Rat
1331728Bp214Blood pressure QTL 2142.825arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)780221299124373579Rat
1331768Kidm10Kidney mass QTL 104.62096kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)780221299125221299Rat
2317052Aia17Adjuvant induced arthritis QTL 172.13joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)781737938126737938Rat
634322Bw12Body weight QTL 120body mass (VT:0001259)body weight (CMO:0000012)783153392128153392Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
1358914Bp266Blood pressure QTL 266arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
71114Niddm14Non-insulin dependent diabetes mellitus QTL 144.5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)784257275129257275Rat
2298475Eau6Experimental allergic uveoretinitis QTL 60.0029uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)784257275129257275Rat
1558655Swd4Spike wave discharge measurement QTL 43.680.0002brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge severity grade (CMO:0001988)786983365131983365Rat
10450828Scl79Serum cholesterol level QTL 793.50.001blood HDL cholesterol amount (VT:0000184)blood low density lipoprotein cholesterol level (CMO:0000053)789867376101773158Rat
1549899Stresp8Stress response QTL 84.370.0008stress-related behavior trait (VT:0010451)defensive burying duration (CMO:0001961)790482196135012528Rat
2299163Iddm34Insulin dependent diabetes mellitus QTL 342.71blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)791281130135012528Rat
631687Hcas1Hepatocarcinoma susceptibility QTL 13.90.001liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)791412594129807172Rat
1331723Bw25Body weight QTL 253.348body mass (VT:0001259)body weight (CMO:0000012)79324212394811326Rat
61397Bw17Body weight QTL 176.3body mass (VT:0001259)body weight (CMO:0000012)793595647106839474Rat
2313102Bmd79Bone mineral density QTL 792.30.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)794811085116738842Rat
1357336Gluco6Glucose level QTL 63.4blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)794811326116294265Rat
731176Glom5Glomerulus QTL 52.50.0035kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)796670164135012528Rat
1298525Cm1Cardiac mass QTL 12.7heart mass (VT:0007028)heart wet weight (CMO:0000069)799736187103146217Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_general number of animals used: 8-13 males, 4 month old from 15 PXO recombinant inbred strains 10402111
qtl_general software used: STATISTICA 10 CZ; ANOVA 10402111
qtl_general measurement method: 4 month old male rats were fed high-sucrose diet for 1 week; blood samples were taken from the tail vein after overnight fasting, lipoprotein fractions were determined by HPLC 10402111
qtl_general confidence interval: 100,067-107,086 Kbp 10402111
qtl_general 20 genes are present in this region 10402111