D2Uia5 Marker Search Result - Rat Genome Database

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Marker: D2Uia5

Symbol: D2Uia5
Previously known as: oxsts8560; 
RGD ID: 62486
Expected Size: 221 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2215,575,840 - 15,576,061 (+)MAPPERmRatBN7.2
Rnor_6.0213,328,947 - 13,329,167NCBIRnor6.0
Rnor_5.0213,186,164 - 13,186,384UniSTSRnor5.0
RGSC_v3.4213,909,383 - 13,909,604RGDRGSC3.4
RGSC_v3.4213,909,384 - 13,909,604UniSTSRGSC3.4
RGSC_v3.1213,829,752 - 13,829,973RGD
Celera211,853,951 - 11,854,171UniSTS
Cytogenetic Map2 RGD
Is Marker For: Strains:   LEW.SS-(D2Uia5-D2Rat143)/Ayd  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. Medical College of Ohio's SSLP Data file transfer Rapp J, Dene H,Direct Electronic Data transfer Feb.(5)2001 . Medical College of Ohio Department of Physiology and Molecular Medicine.
3. UniSTS Pipeline RGD automated pipelines
4. Electronic SSLP Data Transfer Sheffield V, Direct Electronic Transfer of SSLP Dataset.2000 Oct;10.

Strains and Sequence

Sequence
 
Forward Primer GCCATTGGCTTGTTGTAAAC
Reverse Primer AGACAGACCTGTTTTGCCTG
 

Region

Nucleotide Sequences
GenBank Nucleotide CH473955 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578664Bmd9Bone mineral QTL density 95femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)21185206249003364Rat
738010Lnnr3Liver neoplastic nodule remodeling QTL 32.94liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)2141244106Rat
10755430Coatc6Coat color QTL 60.02576coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)21159110056591100Rat
1600379Mcs18Mammary carcinoma susceptibility QTL 182.6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)2788777242804738Rat
738012Anxrr3Anxiety related response QTL 33.8exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)2902351954023519Rat
61368Mcs1Mammary carcinoma susceptibility QTL 14.4mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)2788777223319447Rat
631682Bp115Blood pressure QTL 1154.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2137410502Rat
61355Bp36Blood pressure QTL 362.9blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)25873687102844969Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
Database Acc Id Source(s)
NCBI Nucleotide AF056691
UniSTS 240472 UniSTS