GDB:194747 Marker Search Result - Rat Genome Database

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Symbol:

GDB:194747

Previously known as:

RGD ID:

5500340

Expected Size:

131 (bp)

Position

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	37,759,098 - 37,759,229 (+)	MAPPER	mRatBN7.2
mRatBN7.2	X	67,301,536 - 67,301,970 (+)	MAPPER	mRatBN7.2
Rnor_6.0	X	72,077,123 - 72,077,556	NCBI	Rnor6.0
Rnor_6.0	4	35,730,345 - 35,730,475	NCBI	Rnor6.0
Rnor_5.0	4	35,587,965 - 35,588,095	UniSTS	Rnor5.0
Rnor_5.0	X	72,919,045 - 72,919,478	UniSTS	Rnor5.0
RGSC_v3.4	4	34,794,409 - 34,794,539	UniSTS	RGSC3.4
RGSC_v3.4	X	90,252,389 - 90,252,822	UniSTS	RGSC3.4
Celera	4	33,242,986 - 33,243,116	UniSTS
Celera	X	67,655,319 - 67,655,752	UniSTS
Cytogenetic Map	X	q31	UniSTS

Is Marker For:

Genes: Rps4x-ps9 LOC100364620 Rps4x

Annotation

References - curated

#	Reference Title	Reference Citation
1.	UniSTS Pipeline	RGD automated pipelines

Strains and Sequence

Sequence


Forward Primer	CGGCTCCAAAACACTGGATG
Reverse Primer	CAGGGCATACTTAAGTCTGTTCCTTAGC

Region

Nucleotide Sequences


RefSeq Transcripts	NM_001007600	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_002730258	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_003754775.1	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC086560	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ220060	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ220198	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ226324	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ229741	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ230280	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Additional Information

External Database Links

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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