Sox9 Marker Search Result - Rat Genome Database

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General

Marker: Sox9

Symbol:

Sox9

Previously known as:

RGD ID:

5088116

Expected Size:

207 (bp)

Notes

this SSLP was found to have more than 4 positions (total 5 positions) on the RGSC 5.0 genome assembly

Position

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	97,809,268 - 97,809,475 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	101,291,307 - 101,291,513	NCBI	Rnor6.0
Rnor_5.0	10	100,967,858 - 100,968,064	UniSTS	Rnor5.0
RGSC_v3.4	10	102,388,691 - 102,388,897	UniSTS	RGSC3.4
Celera	10	96,426,980 - 96,427,186	UniSTS
Cytogenetic Map	10	q32.1	UniSTS

Is Marker For:

Genes: Sox9

Annotation

References - curated

#	Reference Title	Reference Citation
1.	UniSTS Pipeline	RGD automated pipelines

Strains and Sequence

Sequence


Forward Primer	CCACGTGTGGATGTCGAAG
Reverse Primer	CTCAGCTGCTCCGTCTTGAT

Region

Nucleotide Sequences


RefSeq Transcripts	XM_001081628	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_003750950.1	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Additional Information

External Database Links

Database	Acc Id	Source(s)
NCBI Gene	140586	UniSTS
UniSTS	516415	UniSTS

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Marker: Sox9