RH127513 Marker Search Result - Rat Genome Database

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Marker: RH127513

Symbol: RH127513
Previously known as: AA818859; 
RGD ID: 5039102
Expected Size: 215 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21567,638,524 - 67,638,739 (-)MAPPERmRatBN7.2
mRatBN7.21567,638,524 - 67,638,739 (+)MAPPERmRatBN7.2
mRatBN7.21442,745,339 - 42,745,554 (+)MAPPERmRatBN7.2
Rnor_6.01444,375,488 - 44,375,702NCBIRnor6.0
Rnor_6.01575,067,443 - 75,067,657NCBIRnor6.0
Rnor_5.01444,195,035 - 44,195,249UniSTSRnor5.0
Rnor_5.01578,628,135 - 78,628,349UniSTSRnor5.0
RGSC_v3.41445,439,196 - 45,439,410UniSTSRGSC3.4
RGSC_v3.41574,072,195 - 74,072,409UniSTSRGSC3.4
Celera1567,074,812 - 67,075,026UniSTS
Celera1441,896,305 - 41,896,519UniSTS
Cytogenetic Map15q21UniSTS
Cytogenetic Map1q41UniSTS
Is Marker For: Genes:   Rplp2   LOC498555   LOC100363838   LOC100362751   LOC100911575  


Annotation


References - curated
# Reference Title Reference Citation
1. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer TCCGACTCCTCAGACTCCTCTT
Reverse Primer GACGATGAACGACTCAACAAGG
 

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
2324107LOC100362751ribosomal protein P2-like144274528042745734Rat
1590791LOC498555similar to 60S acidic ribosomal protein P2156763836567638804Rat

Nucleotide Sequences
RefSeq Transcripts NM_001030021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_002728106 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003749013.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003752722.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_573831 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC099697 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DH832379 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217138 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217658 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221181 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221401 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221478 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221584 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221984 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222461 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222498 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223422 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228678 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FT143028 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1581500Renag1Renal agenesis QTL 1kidney development trait (VT:0000527)percentage of study population developing unilateral renal agenesis during a period of time (CMO:0000940)14817066868298175Rat
1358296Ael3Aortic elastin QTL 33.70.00051aorta elastin amount (VT:0003905)aortic elastin14826709053267090Rat
2302045Pia39Pristane induced arthritis QTL 394.90.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G2a level (CMO:0002116)14826709053267090Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141103062295876975Rat
2313397Coatc1Coat color QTL1coat/hair pigmentation trait (VT:0010463)coat/hair color measurement (CMO:0001808)141854133263541332Rat
10755459Coatc15Coat color QTL 150.01681coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)141983694464836944Rat
70187Pancm5Pancreatic morphology QTL 516.7pancreas mass (VT:0010144)pancreas weight to body weight ratio (CMO:0000630)143032009280829842Rat
1300154Bp189Blood pressure QTL 1893.04arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)143088377768757901Rat
2313048Bss84Bone structure and strength QTL 843.10.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143766971982669719Rat
2313084Bss83Bone structure and strength QTL 832.90.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143766971982669719Rat
2313089Bss81Bone structure and strength QTL 813.40.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)143766971982669719Rat
2313100Bss82Bone structure and strength QTL 8230.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143766971982669719Rat
738037Hcas6Hepatocarcinoma susceptibility QTL 62.93liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)143905723783368335Rat
70214Niddm28Non-insulin dependent diabetes mellitus QTL 284.06blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)143999825175582726Rat
631523Pia13Pristane induced arthritis QTL 133.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)144079346098037301Rat
1300136Rf22Renal function QTL 223.9renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)144226252995023211Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151672552880672115Rat
1331729Rf42Renal function QTL 423.071kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)151736289773690657Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)152280624098288169Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)152280624098288169Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)152280624098288169Rat
1582214Stl21Serum triglyceride level QTL 213.10.022blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)152803066582262678Rat
1582227Gluco30Glucose level QTL 303.60.0003blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)152803066582262678Rat
1582228Epfw3Epididymal fat weight QTL 34.10.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat
1582242Gluco28Glucose level QTL 283.30.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)152803066582262678Rat
1582244Bw79Body weight QTL 7940.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat
2293691Bmd37Bone mineral density QTL 376.60.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)153361105871477291Rat
2293686Bmd36Bone mineral density QTL 367.40.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)153361105871477291Rat
1598828Glom14Glomerulus QTL 142.5kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)153405413979054139Rat
1300144Rf23Renal function QTL 233.61renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)154063126898288169Rat
724545Niddm54Non-insulin dependent diabetes mellitus QTL 540.02blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)155079449473699215Rat
2317050Aia24Adjuvant induced arthritis QTL 242.06joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)155284790873690657Rat
1576315Schws6Schwannoma susceptibility QTL 60.0069nervous system integrity trait (VT:0010566)post-insult time of death (CMO:0002005)155380615298806152Rat
61477Aia4Adjuvant induced arthritis QTL 43joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)155559608991365858Rat
631516Gluco31Glucose level QTL 317blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)155559608995018120Rat
631655Bp126Blood pressure QTL 1264arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1558156477101769107Rat
2313080Bss65Bone structure and strength QTL 653.90.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)156099046873690657Rat
731177Uae26Urinary albumin excretion QTL 262.40.025urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1567588667101769107Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene 100362751 UniSTS
  100363838 UniSTS
  100911575 UniSTS
  140662 UniSTS
  498555 UniSTS
UniSTS 210823 UniSTS