D8Rat227 Marker Search Result - Rat Genome Database

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Marker: D8Rat227

Symbol: D8Rat227
Previously known as: R0347-B07; oxsts11592; 
RGD ID: 42843
Expected Size: 241 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.282,569,748 - 2,569,991 (+)MAPPERmRatBN7.2
Rnor_6.082,586,986 - 2,587,228NCBIRnor6.0
Rnor_5.082,609,219 - 2,609,461UniSTSRnor5.0
RGSC_v3.482,009,216 - 2,009,458UniSTSRGSC3.4
RGSC_v3.482,009,215 - 2,009,457RGDRGSC3.4
RGSC_v3.182,009,215 - 2,009,457RGD
Celera82,436,641 - 2,436,869UniSTS
RH 2.0 Map80.0RGD
SHRSP x BN Map80.04RGD


Annotation



Strains and Sequence

Sequence
 
Forward Primer CATGCATACACATTTCCAATCA
Reverse Primer TTATTGCTGCTGGCATGTTC
 
Template 
ACAGAAACCTGAACCTCCCACTCCTGGGGATCTTATGTTATCTTCAAGTGTCTGTATGCATCTA
AACTCATGCATACACATTTCCAATCATATACACATATACAAAAAATTCTTTAAATTAAATATAA
ATTTTAAATTTTTCAAACATTTAAAACTTTAGTGTGTGTGTCTTCATTTGGCATGCATGTGTAT
GTGCCNCTATCTCTCCTCTGTGTGTGCTTGTGTGCGTGTGTGTGTGTGTTTGTGTATGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTATTAGAAAGAACATGCCAGCAGCAATAAGGTGGGGTTTA
AAGAATACTTTAAAGGAATCTGTACCCTTATTACATGNCGAGTGCAACTGGGAACCTACTGTAA
TCAAAATGATACTTAGATTCCGTTCATTAAAATGTTGCTATATCTTGAAAAGCACACTCATAAA
AGCATGTCCATTGGGAACTCACTGAATTCCCGTAGAAATTTTGACTCCATTCCTGAAAATTTTT
CNATATCCCGAACAGTCCACTTATTACTATTGCAGCCTATTGGGAACTAACAGAATTCACCAAG
TTACTTACATTCGGCTCAAGAAATTGAGATAAATCTTTAAAAGTGGGTACCGAGCTCGAATTCG
TAATCATGGTCATAGTGTTTCCGTGTGAAATTGTTATCCGCTCACAATTCCACACACATACGAG
CCGGAAGCTAAGTGTAAGCCGGGGTGCTATGAGTGAGCTACTCACTTANTGCGNGGCCATGCCG
CTTCAGTCNGAACGNNNCNGCNCTTATNATCGCANGCNGGGANGGGTTNNNTNNGCCNGGNNNT
NTT

Region

Nucleotide Sequences
GenBank Nucleotide CH474089 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000238 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
71120Niddm21Non-insulin dependent diabetes mellitus QTL 213.73blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)813402289Rat
12880023Bw184Body weight QTL 1840.001body mass (VT:0001259)body weight (CMO:0000012)8209764047097640Rat
9590084Insglur5Insulin/glucose ratio QTL 518.540.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)8124597739Rat
12880028Cm103Cardiac mass QTL 1030.02heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)8209764047097640Rat
12880044Am9Aortic mass QTL 90.007aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)8209764047097640Rat
2317882Alcrsp24Alcohol response QTL 243.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)8125902202Rat
12880025Cm102Cardiac mass QTL 1020.044heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)8209764047097640Rat


Additional Information

Database Acc Id Source(s)
UniSTS 228292 UniSTS