D6Rat184 Marker Search Result - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

Marker: D6Rat184

Symbol: D6Rat184
Previously known as: R0316-C02; oxsts11247; 
RGD ID: 42809
Expected Size: 128 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26116,506,292 - 116,506,390 (+)MAPPERmRatBN7.2
Rnor_6.06121,224,054 - 121,224,151NCBIRnor6.0
Rnor_5.06130,448,688 - 130,448,785UniSTSRnor5.0
RGSC_v3.46121,381,065 - 121,381,163RGDRGSC3.4
RGSC_v3.46121,381,066 - 121,381,163UniSTSRGSC3.4
RGSC_v3.16121,384,812 - 121,384,910RGD
Celera6114,095,665 - 114,095,762UniSTS
SHRSP x BN Map670.2599RGD
SHRSP x BN Map670.2599UniSTS
Is Marker For: Strains:   BB.SHR-(D6Rat184-D6Rat101)/K   BB.SHR-(D6Rat184-D6Rat3)/K   MWF.SHR-(D6Rat1-D6Rat184)/Rkb  
QTLs:   Iddm18   Anxrr28  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer GGCACTCTTCTTAATCTTTCTTCC
Reverse Primer TGACCTTCTTTGTGTTGTACCTG
 
Template
CATCCCCCTATAGGAGGCACTCTTCTTAATCTTTCTTCCTTATAAGGTCTTTTGTTCTCCTTTA
GAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTCAGGTACA
ACACAAAGAAGGTCAGTGTATTTGACAACACCTCATTTCTACATTAATTTTCTGATTGCTGTTA
CAAAATACTTGGGTCTATAAAGTGAATGATCCATATGCGTCATCCACAATCAGGAAGCAAAATG
CACAGGGAGAAGAATGCTAGTACTTCAGTTTCACACTTCNCCTTTTCATTCCTTTTTCAGACAA
CTGTGAATTCCCAGTNTTTGTGCACAGTGACCAGCCACACTCAGGGTAGATTTCCCTACTCAGT
TAAACCATTCNCGAAACATGTTCATGGGTACTCCCTGAGGTATGTTTCTAGGTGATTCAGATTT
CACTCAAATTTTTGTGAATTTAGGGGTACCGAGCTCGAATTCGTAATCATGGTCATAGCTGTTT
CCTGTGTGAAATTGTTATCCGCTCACAATTCCACACAACATACGAGCCGGAAGCATAAAGTGTA
AAGCCTGGGGTGCCTAATGAGTGAGCTAACTCACATTAATTGCGTTGGCTCACTGCCGCTTTCC
AGTCGGGAAANTGTCGTGCCANTGCATTAATGAATCGGCCAACGCGGGGGAGAGGGGTTTGGTA
TGGGCGCAGGTGGTTNTCTTTCNCGTGAGAGGGCAAGTGTTGCCTTCACGCTGGCCGAGAAGTT
GANAGNGTNNGTGGTTGCNAGNGGAAATNTGTTGNGGNGNCGNTNGANATCTTATCAAAGATGC
CGGNNGGNNGNTT

Region

Nucleotide Sequences
GenBank Nucleotide CH473982 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
12801411Schws8Schwannoma susceptibility QTL 8nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)694968928139968928Rat
1331797Bp213Blood pressure QTL 2133.291arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)6104085867128713626Rat
4145118Mcs26Mammary carcinoma susceptibility QTL 260.0001mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)6106752656132339866Rat
1331799Bp211Blood pressure QTL 2113.66407arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)672202632130919985Rat
1581563Uae33Urinary albumin excretion QTL 33urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)672227641130729205Rat
10054138Gmadr3Adrenal mass QTL 33.680.00045adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)685140138130140138Rat
61414Pia3Pristane induced arthritis QTL 34.5joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)694968928137848904Rat
71111Iddm8Insulin dependent diabetes mellitus QTL 81.90.002blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)6105156861140994061Rat
1358355Srcrt4Stress Responsive Cort QTL 46.39blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)6100364669140994061Rat
724513Uae14Urinary albumin excretion QTL 146.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)685311061133478515Rat
2303624Vencon5Ventilatory control QTL 54.45respiration trait (VT:0001943)minute ventilation (CMO:0000132)688047916133047916Rat
731173Uae22Urinary albumin excretion QTL 2210.1urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
10054123Srcrt6Stress Responsive Cort QTL 62.50.0043blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)685140138130140138Rat
724536Uae7Urinary albumin excretion QTL 73.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)672202632130729475Rat
737976Pia24Pristane induced arthritis QTL 24joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)6112636280140994061Rat
2313399Anxrr28Anxiety related response QTL 28aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)6100671796132340886Rat
1298087Iddm18Insulin dependent diabetes mellitus QTL 180.0001urine glucose amount (VT:0001758)percentage of study population developing diabetes mellitus during a period of time (CMO:0001114)6116506292130245370Rat
70196BpQTLcluster7Blood pressure QTL cluster 76.82arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)672202632117202632Rat
1581550Pur8Proteinuria QTL 8urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)672227641130729205Rat
738034Anxrr5Anxiety related response QTL 55.9exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)684130881129130881Rat
1331725Bp212Blood pressure QTL 2123.52475arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)693701310128713626Rat
2290393Uae37Urinary albumin excretion QTL 370.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
8552796Vie3Viral induced encephalitis QTL 32.6brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)696833997140994061Rat
1300076Glom8Glomerulus QTL 879e-09kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)686894788131894788Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene 100307064 UniSTS
  408120 UniSTS
UniSTS 228022 UniSTS