D6Rat146 Marker Search Result - Rat Genome Database

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General

Marker: D6Rat146

Symbol:

D6Rat146

Previously known as:

oxsts11210; R0221-D05;

RGD ID:

41266

Expected Size:

154 (bp)

Position

Rat Assembly	Chr	Position (strand)	Source	JBrowse
RH 2.0 Map	6	180.1	RGD
SHRSP x BN Map	6	22.8698	RGD

Is Marker For:

Strains: AVN/Orl BBDP/Rhw BBDR/Rhw ACI.COP-(D6Rat80-D6Rat146)/Shul COP/OlaHsd BC/CpbU BDIX/Han BN/SsNHsd BP/Cub BUF/Pit DA/PitN DON/Melb F344/Pit FHH/Eur IS/Kyo LE/Mol LEW/Pit LH/Mav MHS/Gib MNRA/N WN/N WKY/OlaHsd WTC/Kyo LOU/CHan MNR/N MR/Pit ODU/N WF/Pit WIST/Nhg SR/Jr MNS/Gib NP9 OKA/Wsl OM/Ztm P5C PVG/Pit SD/Rij SHR/OlaHsd SHRSP/Riv WAG/RijKyo GK/KyoSwe M520/N ACI/N BN-Lx/Cub LN/Mav GH/Omr NEDH/K SS/Jr
QTLs: Emca10

Annotation

References - curated

#	Reference Title	Reference Citation
1.	Data downloaded from Wellcome Trust, University of Oxford	Data downloaded from Wellcome Trust, University of Oxford
2.	Rat Genetic Map Data	Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3.	Electronic Transfer of SSLP Data	Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4.	UniSTS Pipeline	RGD automated pipelines
5.	RH Map Project	RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
6.	A high density integrated genetic linkage and radiation hybrid map of the laboratory rat	Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8

Strains and Sequence

Sequence


Forward Primer	GCCGTGACAATTCTGGAAAT
Reverse Primer	TAGACAGTCTGGAGCAGCCC

Template	GATCCCGTGGTAGACAGTCTGGAGCAGCCCCATATCCCCATACCTGGAGTTAAACTGAAAAGAC ATACTATTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTGTGTGTGTG TGTTTTAAGAAACCAAATTTCCAGAATTGTCACGGCAATTCCCACCTCTCTCTCTCTCTCTCTC TCNCNCNCNNNGNGGGGGGGGNGNGNGNGNGNGNGNCTGNNNNTNCACATATATTTGAGAAATN NNGACTCCCTCCCTCCCGTCCTANAAATGNAGGGATAGCGCGCTCAAATNCATAAACAGAGACA TANCTNTTNTNTGTGAGAAATTNATANNCGCACACAAATACACAAAACATAAGAGGGG

Strain Variation

Strain, Expected Size(s)

ACI/N	156
AVN/Orl	158
BBDP/Rhw	158
BBDR/Rhw	158
BC/CpbU	168
BDIX/Han	170
BN-Lx/Cub	158
BN/SsNHsd	158
BP/Cub	154
BUF/Pit	158
COP/OlaHsd	170
DA/PitN	156

DON/Melb	158
F344/Pit	158
FHH/Eur	158
GH/Omr	158
GK/KyoSwe	156
IS/Kyo	156
LE/Mol	170
LEW/Pit	158
LH/Mav	156
LN/Mav	156
LOU/CHan	158
M520/N	158

MHS/Gib	174
MNR/N	170
MNRA/N	170
MNS/Gib	158
MR/Pit	170
NEDH/K	170
NP9	158
ODU/N	156
OKA/Wsl	156
OM/Ztm	158
P5C	158
PVG/Pit	158

SD/Rij	158
SHR/OlaHsd	156
SHRSP/Riv	156
SR/Jr	158
SS/Jr	158
WAG/RijKyo	158
WF/Pit	158
WIST/Nhg	158
WKY/OlaHsd	156
WN/N	158
WTC/Kyo	156

Region

Nucleotide Sequences

Additional Information

External Database Links

Database	Acc Id	Source(s)
NCBI Gene	100302926	UniSTS
UniSTS	122217	UniSTS

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Marker: D6Rat146