D15Rat106 Marker Search Result - Rat Genome Database

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Marker: D15Rat106

Symbol: D15Rat106
Previously known as: oxsts9612; R0232-A08; 
RGD ID: 40516
Expected Size: 214 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr815104,694,807 - 104,695,021 (+)Marker Load Pipeline
mRatBN7.21598,287,955 - 98,288,169 (+)MAPPERmRatBN7.2
Rnor_6.015106,550,444 - 106,550,657NCBIRnor6.0
Rnor_5.015109,944,744 - 109,944,957UniSTSRnor5.0
RGSC_v3.415106,177,703 - 106,177,917RGDRGSC3.4
RGSC_v3.415106,177,704 - 106,177,917UniSTSRGSC3.4
Celera1597,072,390 - 97,072,603UniSTS
RGSC_v3.115106,193,484 - 106,193,697RGD
RH 3.4 Map15688.5UniSTS
RH 3.4 Map15688.5RGD
SHRSP x BN Map1565.3898UniSTS
SHRSP x BN Map1565.3898RGD
FHH x ACI Map1574.04RGD
Cytogenetic Map15q24-q25UniSTS
Is Marker For: Strains:   ACI/N   AVN/Orl   BBDR/Rhw   BBDP/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BN-Lx/Cub   BN/SsNHsd   BP/Cub   BUF/Pit   COP/OlaHsd   DA/PitN   FHH/Eur   F344/Pit   GH/Omr   GK/KyoSwe   DON/Melb   M520/N   IS/Kyo   WN/N   LH/Mav   LE/Mol   LEW/Pit   LOU/CHan   LN/Mav   MHS/Gib   MNR/N   MNRA/N   MNS/Gib   MR/Pit   NEDH/K   NP9   ODU/N   OKA/Wsl   OM/Ztm   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   SR/Jr   SHRSP/Riv   SS/Jr   WAG/RijKyo   WF/Pit   WIST/Nhg   WKY/OlaHsd   WTC/Kyo   SHR.WKY-(D15Rat95-D15Rat106)/Tkyo   SHRSP.WKY-(D15Rat68-D15Rat106)/Tkyo  
QTLs:   Bp190   Kidm7   Rf23   Bss7   Bmd18   Bmd17   Bss19   Aia10  
Genes:   Farp1  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer AAACCTGTGGTCTCTACACACAG
Reverse Primer GCCACTACCCCAATTGGACT
 
Template 
GTCGCTCTAGAGGATCCCCCTGAACTACATCCTAGGCCACTACCCCAATTGGACTATTTGTGCG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAC
AGAGACAGAGCAGAGACAGACAGAGACAGAGACAGAGAGAGACAGAGAGAGAGAGNGCTGTGTG
TAGAGACCACAGGTTTATGTTGGATTTTTTNTNTAATATNTTTTGTTTTTNTTTTNTGTGTGCA
TTGAATTAGCATACACGATTATNTAGAATACATGGCTGTGAGGGGTANGAGNTNGAATTCCGTA
ATCATGGTTCATAGTGTTTNTGTGTGAAATTGTTATCCGCNCACAATTCCACACAACATAGACC
GGAAGCTAAAGTGTAAAGNTGGGGTGNTAATGAGTGAGCANTCACTNAANGCCNNGCNNCANGC
NCGCTTNAGTGGGAAACTGTCT

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1305346Farp1FERM, ARH/RhoGEF and pleckstrin domain protein 1159812430498363299Rat

Nucleotide Sequences
GenBank Nucleotide CH473951 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
731177Uae26Urinary albumin excretion QTL 262.40.025urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1567588667101769107Rat
1576315Schws6Schwannoma susceptibility QTL 60.0069nervous system integrity trait (VT:0010566)post-insult time of death (CMO:0002005)155380615298806152Rat
1300144Rf23Renal function QTL 233.61renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)154063126898288169Rat
1549844Bss7Bone structure and strength QTL 76.4femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1575788062101769107Rat
2300326Plaw1Placental weight QTL 1150.005placenta mass (VT:0004257)placenta wet weight (CMO:0002088)1568327165100062518Rat
1300118Bp190Blood pressure QTL 1902.94arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)158226252098288169Rat
1358354Srcrt5Stress Responsive Cort QTL 53.38blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)159815000199043291Rat
70155Gcs1Gastric cancer susceptibility QTL13.8stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)1576306099101769107Rat
1300120Kidm7Kidney mass QTL 73.55kidney mass (VT:0002707)left kidney wet weight to body weight ratio (CMO:0001954)158226252098288169Rat
631655Bp126Blood pressure QTL 1264arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1558156477101769107Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)152280624098288169Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)152280624098288169Rat
1641889Colcr6Colorectal carcinoma resistance QTL 62.90.0126intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)157369051899794247Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)152280624098288169Rat
2317055Aia10Adjuvant induced arthritis QTL 103.41joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)1575788062101769107Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene 100303094 UniSTS
  100303185 UniSTS
  100303189 UniSTS
  100303333 UniSTS
  100381240 UniSTS
  306183 UniSTS
  444917 UniSTS
  444919 UniSTS
  444943 UniSTS