D5Rat131 Marker Search Result - Rat Genome Database

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Marker: D5Rat131

Symbol: D5Rat131
Previously known as: R0251-B06; oxsts11040; 
RGD ID: 40386
Expected Size: 157 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.0539,377,361 - 39,377,516NCBIRnor5.0
RGSC_v3.4535,390,492 - 35,390,646RGDRGSC3.4
RGSC_v3.1535,390,671 - 35,390,825RGD
SHRSP x BN Map520.43RGD
SHRSP x BN Map520.43UniSTS
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BBDR/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BN/SsNHsd   BP/Cub   BUF/Pit   DA/PitN   DON/Melb   F344/Pit   FHH/Eur   IS/Kyo   LE/Mol   LEW/Pit   LH/Mav   MHS/Gib   MNRA/N   WN/N   WKY/OlaHsd   WTC/Kyo   LOU/CHan   MNR/N   MR/Pit   ODU/N   WF/Pit   WIST/Nhg   SR/Jr   MNS/Gib   NP9   OM/Ztm   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   SHRSP/Riv   WAG/RijKyo   GK/KyoSwe   M520/N   ACI/N   BN-Lx/Cub   LN/Mav   GH/Omr   NEDH/K   SS/Jr   COP/OlaHsd  
QTLs:   Srcrtb2   Rf36   Gluco47  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer GGGGTACCAAATTAATCTTCCC
Reverse Primer TGCAAGAACACGTGCACATA
 
Template
CGCCAAGCTTGCATAGCCTAGCAGGTCAGACTCTAAGAAGGATCCCCCTGCAAGAACACGTGCA
CATAACCCACCACATGTGACGCACGCGCACACACACACACACACACACACACACACACACACAC
AACTTTAATACAACTTCAAGTTACCAAAACACTAGTACATTAATTGAGAATGACTGGGAAGATT
AATTTGGTACCCCATAGTACAGATACTGTAACTGAGACCTGTAACTACAGGGGTACCGAGACTA
CGAATTACGTAATACATGGTACATAAGACTGTTTACCTGTGTGAAATTGTTATACCGCNCACAA
TTCCACACAACATANGAGCCGGAAGCATAAAGTGTAAAGCTGGGGTGCTAATGAGTGAGNTAAT
ACACATTAATTGNGTTGGCNCATGCNGNTTTCCAGTNGGGAAANTGTNGTGCCAGNTGCATTAA
TGAATNGGCCANGCNGGGGAGAGGGGTTTGGTATTGGGNGNAGGGTGGTTTTTCNTTACAGTGA
GANGGNACGTGATTGNCTCANGNTGGNCGAAGATTG

Region

Nucleotide Sequences


Additional Information

Database Acc Id Source(s)
NCBI Gene 100303147 UniSTS
  100303431 UniSTS
  544402 UniSTS
UniSTS 227860 UniSTS