D5Rat125 Marker Search Result - Rat Genome Database

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Marker: D5Rat125

Symbol: D5Rat125
Previously known as: R0240-A01; oxsts11034; 
RGD ID: 40250
Expected Size: 234 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2517,397,736 - 17,397,969 (+)MAPPERmRatBN7.2
Rnor_6.0517,262,946 - 17,263,178NCBIRnor6.0
Rnor_5.0522,043,678 - 22,043,910UniSTSRnor5.0
RGSC_v3.4517,702,961 - 17,703,194RGDRGSC3.4
RGSC_v3.4517,702,962 - 17,703,194UniSTSRGSC3.4
RGSC_v3.1517,702,962 - 17,703,194RGD
Celera516,740,362 - 16,740,594UniSTS
RH 3.4 Map597.5UniSTS
RH 3.4 Map597.5RGD
SHRSP x BN Map59.2199UniSTS
SHRSP x BN Map59.2199RGD
Is Marker For: Strains:   ACI/N   BBDR/Rhw   BBDP/Rhw   BC/CpbU   BDIX/Han   BN-Lx/Cub   BN/SsNHsd   BP/Cub   BUF/Pit   COP/OlaHsd   DA/PitN   FHH/Eur   F344/Pit   GH/Omr   GK/KyoSwe   DON/Melb   M520/N   IS/Kyo   WN/N   LH/Mav   LE/Mol   LEW/Pit   LOU/CHan   LN/Mav   MHS/Gib   MNR/N   MNRA/N   MNS/Gib   MR/Pit   NEDH/K   NP9   ODU/N   OKA/Wsl   OM/Ztm   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   SR/Jr   SHRSP/Riv   SS/Jr   WAG/RijKyo   WF/Pit   WIST/Nhg   WKY/OlaHsd   WTC/Kyo   LOU.BN-(D5Rat59-D5Rat125)/Bbb  
QTLs:   Pur18  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer TCCACAGTATTCCCTGGTCC
Reverse Primer ACGTTGTATTGGCCAACATG
 
Template 
CACCCCNAAAGNTTTTACACGTTGTATTGGCCAACATGTAGTTCACTTTTGAAAGGTCTACTTG
TAACATGTAACGTGACTTCTAAAAAATATATTGCATTTGCATGACTCTCTCTCTCTTNNTCTCT
CTCTCTCNCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTGTGT
GTCCCAGTTGTNAAGTTTNCAGAAAAATCCCNACACTGAAGGACCAGGGAATACTGTGGAAAAG
GTGGGTACCGAGCTCGATTTCGTAATCATGGTCATAGCTGTTTCCTGTGTGAAATTGTNATCCG
CCCACAATTCCACACAANATAGGACCCGGANNCATAAAGTGTAAAGCCTGGGGTGCCTAGTGNG
TGNGCNAACNCACATTANTTGNNTGGCGCNCACTGCCCGTTTTCCTGTCGGGNAACGTNTNGTG
CGGTCTGCTTTAATATNGCGGCNAACGCGCGGAGAGGGGNGNTNNGCATTTGCGCANANNGTNN
TTTCTTTNNC

Region

Nucleotide Sequences
GenBank Nucleotide CH473984 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000235 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331756Rf34Renal function QTL 344.16275kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)5190450412Rat
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)51131345958Rat
1331771Rf35Renal function QTL 354.36965kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)572947086724018Rat
2312562Pur18Proteinuria QTL 182.60.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)5213896532656739Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
8662454Vetf3Vascular elastic tissue fragility QTL 327.4artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)5228222669540447Rat
2313085Bss59Bone structure and strength QTL 592.90.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)5384401826141981Rat
1300117Hrtrt8Heart rate QTL 83.49heart pumping trait (VT:2000009)heart rate (CMO:0000002)5384401847869213Rat
61462Niddm10Non-insulin dependent diabetes mellitus QTL 103.90.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)5511215947171491Rat
631827Alc4Alcohol consumption QTL 43.5consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)5818750118616199Rat
2293666Bmd38Bone mineral density QTL 384.4femur size trait (VT:1000369)femoral neck cortical cross-sectional area (CMO:0001702)5894822853948228Rat
7394712Emca13Estrogen-induced mammary cancer QTL 13mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)5982326699753708Rat
1641903Alcrsp3Alcohol response QTL 3response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)51268928557689285Rat
634305Mamtr1Mammary tumor resistance QTL 10.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)512789751113558310Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene 100303441 UniSTS
UniSTS 122087 UniSTS