D1Rat146 Marker Search Result - Rat Genome Database

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Marker: D1Rat146

Symbol: D1Rat146
Previously known as: oxsts10099; R0087-D05; 
RGD ID: 39364
Expected Size: 249 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21135,527,115 - 135,527,524 (+)MAPPERmRatBN7.2
mRatBN7.21135,527,212 - 135,527,524 (+)MAPPERmRatBN7.2
Rnor_6.01143,402,813 - 143,403,124NCBIRnor6.0
Rnor_6.01143,402,716 - 143,403,124NCBIRnor6.0
Rnor_5.01144,346,538 - 144,346,849UniSTSRnor5.0
Rnor_5.01144,346,441 - 144,346,849UniSTSRnor5.0
RGSC_v3.41137,786,641 - 137,786,952UniSTSRGSC3.4
RGSC_v3.41137,786,544 - 137,786,952UniSTSRGSC3.4
Celera1127,577,731 - 127,578,139UniSTS
Celera1127,577,828 - 127,578,139UniSTS
RGSC_v3.11137,865,031 - 137,865,416RGD
SHRSP x BN Map168.8399UniSTS
SHRSP x BN Map168.8399RGD
FHH x ACI Map167.73RGD
Cytogenetic Map1q31UniSTS
Is Marker For: Strains:   AVN/Orl   BBDR/Rhw   BBDP/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BP/Cub   BUF/Pit   COP/OlaHsd   DA/PitN   F344/Pit   GH/Omr   GK/KyoSwe   DON/Melb   M520/N   IS/Kyo   WN/N   LH/Mav   LE/Mol   LEW/Pit   LOU/CHan   LN/Mav   MHS/Gib   MNR/N   MNRA/N   MNS/Gib   MR/Pit   NEDH/K   NP9   ODU/N   OKA/Wsl   OM/Ztm   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   SS/Jr   WAG/RijKyo   WIST/Nhg   WKY/OlaHsd   WTC/Kyo   SR/Jr   SHRSP/Riv  
Genes:   Whamm  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer CCTGGCTCAGAACTGCAAGT
Reverse Primer TGGGGACCTTGAAGTTGAAA
 
Template 
CAAGTTGCATGCCTGCAGGTCGACTCTAGAGGATCCCCTGGTGGGAGAGAGTGGGGACCTTGAA
GTTGAAACAGTAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTTTTGCTAGGATAGTCAGAGTGAGTTTCTGCGCACCTGGCTCTTGTTTTTTGGAAAC
AGTGTCTCAATCTGTGGTTCAGGCTGGCTTTGAACTCAGGACAGTCCTCTGCCTTAGCCTCTCC
AGTCCCGGGATTAGGTAAAAGTTTACTTGCAGTTCTGAGCCAGGCTCCGCCCTTCACCTTTTCC
CTCATTCTGAGCAGAGCAGGATGTTGTAATGGGAAAGGGGTACCGAGCTCGAATTCGTAATCAT
GGTCATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATTCCACACAACATACGAGCCGG
AAGCATAAAGTGTAAAG

Region

Nucleotide Sequences
GenBank Nucleotide CH473980 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
NCBI Gene 293057 UniSTS