DXRat59 Marker Search Result - Rat Genome Database

Send us a Message



 Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap)  (beta) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer) Overgo Probe Designer
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

Marker: DXRat59

Symbol: DXRat59
Previously known as: R0083-B05; oxsts11801; 
RGD ID: 39080
Expected Size: 141 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X41,271,109 - 41,271,247 (+)MAPPERmRatBN7.2
Rnor_6.0X44,529,486 - 44,529,623NCBIRnor6.0
Rnor_5.0X44,831,143 - 44,831,280UniSTSRnor5.0
CeleraX41,930,623 - 41,930,760UniSTS
RH 3.4 MapX580.7UniSTS
RH 3.4 MapX580.7RGD
RH 2.0 Map21473.9RGD
SHRSP x BN MapX14.89RGD
FHH x ACI MapX16.69RGD
Cytogenetic MapXq22UniSTS
Is Marker For: Strains:   BBDP/Rhw   BBDR/Rhw   BN/SsNHsd   BP/Cub   DA/PitN   F344/Pit   FHH/Eur   LE/Mol   LEW/Pit   LH/Mav   MNRA/N   WN/N   WTC/Kyo   LOU/CHan   MNR/N   MR/Pit   WF/Pit   WIST/Nhg   SR/Jr   NP9   PVG/Pit   SHR/OlaHsd   GK/KyoSwe   M520/N   ACI/N   LN/Mav   NEDH/K   SS/Jr  
Genes:   RGD1562775  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5. UniSTS Pipeline RGD automated pipelines
6. RH Map Project RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
7. A high density integrated genetic linkage and radiation hybrid map of the laboratory rat Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8

Strains and Sequence

Sequence
 
Forward Primer TTCCTTTTCCTCATCTCCCC
Reverse Primer AAGATGGACAGCGATTGAGG
 
Template 
CAAGCTTGCATGCCTGCAGGTCGACTCTAGAGGATCCCCCCTGTCTCAAAATTAAGATGGACAG
CGATTGAGGAAAACATCTGATGTCAACCTCTAACCTACACGTGCGCGCGTGGGCGCACACTACA
CACACACACACACACACACACACACACACACACACACACACACACGGGGGAGATGAGGAAAAGG
AAGTAGGGGAAAGGCAACAATGAAGGGAGAGACGAGAAAGAGACAGACAGCCAA
Strain Variation
Strain, Expected Size(s)
ACI/N138
BBDP/Rhw138
BBDR/Rhw138
BN/SsNHsd138
BP/Cub136
DA/PitN138
F344/Pit138
FHH/Eur138
GK/KyoSwe138
LE/Mol138
LEW/Pit138
LH/Mav138
LN/Mav138
LOU/CHan138
M520/N136
MNR/N138
MNRA/N138
MR/Pit138
NEDH/K138
NP9138
PVG/Pit136
SHR/OlaHsd138
SR/Jr138
SS/Jr138
WF/Pit138
WIST/Nhg136
WN/N136
WTC/Kyo138


Region

Nucleotide Sequences
GenBank Nucleotide CH473966 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000251 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
731181Uae27Urinary albumin excretion QTL 272.70.0059urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)X143491017Rat
1298071Edpm12Estrogen-dependent pituitary mass QTL 123.2pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)X292789847927898Rat
10755455Coatc13Coat color QTL 130coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7440600049406000Rat
631666Iddm5Insulin dependent diabetes mellitus QTL 5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)X449454949494549Rat
61430Cia18Collagen induced arthritis QTL 183.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X14843113120568734Rat
71116Niddm16Non-insulin dependent diabetes mellitus QTL 167.81blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)X1529780260297802Rat
1598837Memor13Memory QTL 133.2exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X41052407146860749Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene 503440 UniSTS
UniSTS 122615 UniSTS