D3Rat83 Marker Search Result - Rat Genome Database

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Marker: D3Rat83

Symbol: D3Rat83
Previously known as: oxsts7010; R0079-B03; 
RGD ID: 38818
Expected Size: 110 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2345,391,621 - 45,391,731 (+)MAPPERmRatBN7.2
Rnor_6.0346,996,378 - 46,996,487NCBIRnor6.0
Rnor_5.0352,104,083 - 52,104,192UniSTSRnor5.0
RGSC_v3.4342,634,978 - 42,635,088RGDRGSC3.4
RGSC_v3.4342,634,979 - 42,635,088UniSTSRGSC3.4
RGSC_v3.1342,531,351 - 42,531,460RGD
Celera345,085,785 - 45,085,894UniSTS
RH 3.4 Map3600.83UniSTS
RH 3.4 Map3600.83RGD
RH 2.0 Map3360.8RGD
SHRSP x BN Map332.8199RGD
Cytogenetic Map3q21UniSTS
Is Marker For: Strains:   ACI/N   AVN/Orl   BBDR/Rhw   BBDP/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BN/SsNHsd   BP/Cub   BUF/Pit   COP/OlaHsd   DA/PitN   FHH/Eur   F344/Pit   GH/Omr   GK/KyoSwe   DON/Melb   M520/N   IS/Kyo   WN/N   LH/Mav   LE/Mol   LEW/Pit   LOU/CHan   LN/Mav   MHS/Gib   MNR/N   MNRA/N   MNS/Gib   MR/Pit   NEDH/K   NP9   ODU/N   OKA/Wsl   OM/Ztm   P5C   SD/Rij   SHR/OlaHsd   SR/Jr   SHRSP/Riv   SS/Jr   WAG/RijKyo   WF/Pit   WIST/Nhg   WKY/OlaHsd   WTC/Kyo   BUF.ACI-(D3Rat56-D3Rat83)/Ncc  
Genes:   Rbms1  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5. UniSTS Pipeline RGD automated pipelines
6. RH Map Project RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
7. A high density integrated genetic linkage and radiation hybrid map of the laboratory rat Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8

Strains and Sequence

Sequence
 
Forward Primer GGCTCTGAGGACTGAGATATGG
Reverse Primer CCAGCAGCCAACAGTTATCA
 
Template 
AATGCTGCAGGTCGACTCTAGAGGATCCCCTCTGGCTGTCCTAGAACCCACTTTGTAGATCAGA
CTGGCCTTAAACTCAGAGATCCATCTGCCTCTGCTTCCCAAGTACTGGGACTAAAAGATTGTGC
TACTACTACTATTTTTAATTTAAGAAATAGAACAGGAAGGATCCAGCAGCCAACAGTTATCATG
CACACACACACACACACACACACACACACACACACACACACACACACACACAGAGCAGAATTCA
GTCCATATCTCAGTCCTCAGAGCCTGTATTTAAGTACCACCAGGGTACCGAGCTCGAATTCGTA
ATCATGGTCATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATTCCACACAACATACGA
GCCGGAAGCATAAAGTGTAAAGCCTGGGGTGCCTAATGAGTGAGCTAACTCACATTAATTGCGT
TGCGCTCACTGCCCGCTTTCCAGTCGGGAAACCTGTCGTGCCAGCTGCATTAATGAATCGGCAA
CGCGCGGGGAGAGCGGTTTCGTATTGGCGCAGGGTGGTTTTCTNNCACAGTGAGANGGCACANT
GATGTCTTCACGCTGGCCTGAGAGAGTNNACANGNCANTGGTT

Region

Nucleotide Sequences
GenBank Nucleotide CH473949 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000233 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
NCBI Gene 362138 UniSTS