D13Rat104 Marker Search Result - Rat Genome Database
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Marker: D13Rat104

Symbol: D13Rat104
Also known as: R0073-C09; oxsts6114; 
RGD ID: 38480
Expected Size: 141 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01335,864,441 - 35,864,585NCBIRnor6.0
Rnor_5.01340,978,835 - 40,978,979UniSTSRnor5.0
RGSC_v3.41332,617,214 - 32,617,359RGDRGSC3.4
RGSC_v3.41332,617,215 - 32,617,359UniSTSRGSC3.4
RGSC_v3.11332,620,038 - 32,620,183RGD
Celera1330,852,492 - 30,852,636UniSTS
RH 2.0 Map1333.5RGD
FHH x ACI Map137.65RGD
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BBDR/Rhw   BC/CpbU   BDIX/Han   BN/SsNHsd   MHS/Gib   MNRA/N   WKY/OlaHsd   LOU/CHan   MNR/N   MR/Pit   ODU/N   MNS/Gib   NP9   OM/Ztm   P5C   WAG/RijKyo   ACI/N   BN-Lx/Cub   LN/Mav   NEDH/K  
Genes:   LOC100365667   LOC100361463  


Annotation



Strains and Sequence

Sequence
 
Forward Primer CAAACCACACAATTCTGCCTT
Reverse Primer CCAAAGACTTGCCTCTGGAC
 
Template
CNAGGATCCCCCTGTTGCAAAGAAATACACCCAAAGACTTGCCTCTGGACTCTACACACATATG
CATACATGGGCGGACACACACACACACACACACACACACACACACACACACACTGTGAACTCAT
CCTATTGTACATTTTCTTGATAAAGGCAGAATTGTGTGGTTTGGTCTTCCTGTGATTACAGAAC
TATATAAAATGTGATTTTTAAAAAAAACTGCTTTTTAAACTCAGATAATATACAGGGGTACCGA
GCTCGAATTCGTAATCATGGTCATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATTCC
ACACAACATACGAGCCGGAAGCATAAAGTGTAAAGCCTGGGGTGCCTAATGAGTGAGCTAACTC
ACATTAATTGCGTTGCGCTCACTGCCCGCTTTCCAGTCGGGAAACCTGTCGTGCCAGCTGCATT
AATGAATCGGCCAACGCGCGGGGAGAGGCGGTTTGCGTATTGGGCGCCAGGGTGGTTTTTCTTT
TCACAGTGAGACGGGCAACAGCTGATTGCCCTTCACCGCCTGGCCCTGANAGAGTTGCACAACG
GTCNNCTGGTTTGNCCAGCAGCGAAATCTGTTGATG
Strain Variation
Strain, Expected Size(s)
ACI/N141
AVN/Orl145
BBDP/Rhw143
BBDR/Rhw149
BC/CpbU145
BDIX/Han145
BN-Lx/Cub145
BN/SsNHsd145
LN/Mav145
LOU/CHan145
MHS/Gib143
MNR/N143
MNRA/N143
MNS/Gib143
MR/Pit143
NEDH/K143
NP9151
ODU/N141
OM/Ztm145
P5C149
WAG/RijKyo145
WKY/OlaHsd141


Region

Nucleotide Sequences
GenBank Nucleotide CH474028 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000243 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2317027Aia22Adjuvant induced arthritis QTL 222.29joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)13136779181Rat
738036Lnnr4Liver neoplastic nodule remodeling QTL 43.64liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)13147622148Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131107975663Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)131107975663Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)131107975663Rat
631672Iddm12Insulin dependent diabetes mellitus QTL 122.20.0032blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)13901674239373058Rat
61339Bp24Blood pressure QTL 240.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)13901674250513953Rat
1581554Pur11Proteinuria QTL 11urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13901690682995569Rat
1581573Uae36Urinary albumin excretion QTL 36urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13901690682995569Rat
1581570Eae17Experimental allergic encephalomyelitis QTL 174.1nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)1312193394108478121Rat
9589141Insul28Insulin level QTL 2810.820.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)131409633059096330Rat
7411662Foco29Food consumption QTL 2920.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)131409633059096330Rat
2317034Aia9Adjuvant induced arthritis QTL 94.62joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)131427908137124697Rat
2317044Aia23Adjuvant induced arthritis QTL 232.3joint integrity trait (VT:0010548)ankle joint diameter (CMO:0002148)131427908137124697Rat
1300163Cardf1Cardiac cell morphology QTL 14.18aorta morphology trait (VT:0000272)artery lesion measurement (CMO:0000975)131444158250799665Rat
2302275Gluco37Glucose level QTL 373.8blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)131444158251577031Rat
2317040Aia21Adjuvant induced arthritis QTL 212.75joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)131462463159624631Rat
2317046Aia8Adjuvant induced arthritis QTL 83.9700000286102295joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)131462463159624631Rat
631645Bp121Blood pressure QTL 1213.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131981081464810814Rat
9589164Gluco66Glucose level QTL 666.670.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)132005247765052477Rat
1331784Bp222Blood pressure QTL 2222.944arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)132148248158537177Rat
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1324502279108770533Rat
61391Bp5Blood pressure QTL 55.6arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)132800833873008338Rat
70170Eae14Experimental allergic encephalomyelitis QTL 140.0024nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)132858445273584452Rat
1558644Cm45Cardiac mass QTL 453.60.002heart mass (VT:0007028)heart wet weight (CMO:0000069)132907693474076934Rat
6893338Cm76Cardiac mass QTL 7600.99heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)132907693474076934Rat
2303030Bp327Blood pressure QTL 327arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)133530126346444796Rat
1354621Rf47Renal function QTL 473.7kidney renin amount (VT:0010559)kidney renin level (CMO:0002166)1335301263107975663Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene 100361463 UniSTS
  100365667 UniSTS
UniSTS 120878 UniSTS