D7Rat78 Marker Search Result - Rat Genome Database

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General

Marker: D7Rat78

Symbol:

D7Rat78

Previously known as:

R0062-C03; oxsts11461;

RGD ID:

37802

Expected Size:

228 (bp)

Position

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_5.0	7	123,378,628 - 123,378,833	UniSTS	Rnor5.0
RGSC_v3.4	7	120,536,569 - 120,536,775	RGD	RGSC3.4
RGSC_v3.4	7	120,536,570 - 120,536,775	UniSTS	RGSC3.4
RGSC_v3.1	7	120,570,799 - 120,571,005	RGD
Celera	7	109,992,435 - 109,992,640	UniSTS
RH 2.0 Map	7	678.9	RGD
SHRSP x BN Map	7	65.7799	RGD
FHH x ACI Map	7	53.35	RGD
Cytogenetic Map	7	q34	UniSTS

Is Marker For:

Strains: AVN/Orl BBDP/Rhw BBDR/Rhw BC/CpbU BDIX/Han BDVII/Cub BN/SsNHsd BP/Cub BUF/Pit DA/PitN DON/Melb F344/Pit FHH/Eur IS/Kyo LE/Mol LEW/Pit LH/Mav MHS/Gib MNRA/N WN/N WKY/OlaHsd WTC/Kyo LOU/CHan MNR/N MR/Pit ODU/N WF/Pit WIST/Nhg SR/Jr MNS/Gib NP9 OKA/Wsl OM/Ztm P5C PVG/Pit SD/Rij SHR/OlaHsd SHRSP/Riv WAG/RijKyo GK/KyoSwe M520/N ACI/N BN-Lx/Cub LN/Mav GH/Omr NEDH/K SS/Jr COP/OlaHsd
QTLs: Hcas1 Bmd53 Bmd29 Bmd21 Bmd32 Bss48
Genes: Srebf2

Annotation

References - curated

#	Reference Title	Reference Citation
1.	Data downloaded from Wellcome Trust, University of Oxford	Data downloaded from Wellcome Trust, University of Oxford
2.	Rat Genetic Map Data	Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3.	Electronic Transfer of SSLP Data	Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4.	UniSTS Pipeline	RGD automated pipelines
5.	RH Map Project	RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
6.	A high density integrated genetic linkage and radiation hybrid map of the laboratory rat	Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8

Strains and Sequence

Sequence


Forward Primer	GACTCTGCTCTGGCTTCCAC
Reverse Primer	GCCTTTTCCCCTAGAACTGC

Template	GCCAAGCTTGCATGCCTGCAGGTCGACTCTAGAGGATCCCCCTCTTCTGGGTGAGGCTGCTGAC TAGTTGCAGTCTTGGGCTATGGTTCTATCTGCCTTTTCCCCTAGAACTGCAGAGCANAGGCATC TTCTGGGTGCCTGGGAAAGAAGGGAGAGAGAGAAAGAACCAGGAGACCACATTGAGTTGCTCTA GATTTCTTGTGTGTTTTTTCTCCTAGGGTGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTCTCTCTCGATGATCTGTGGAAGCCAGAGCAGAG TCAGGTGTTTGTCTCTACCTCCTAATTGGGAGTCATAAGCATACACAGCCACACTCACACTCAG GGGTACGAGCTCGAATTCGTAATCATGGTCATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTC ACAATTCCACACAACATACGAGCCGGAAGCATAAAGTGTAAAGCCTGGGGTGCTAATGAGTGNC TANTCAANAATNGGNGGCTCATGCCNTTCAGTCGGANCTG

Strain Variation

Strain, Expected Size(s)

ACI/N	218
AVN/Orl	210
BBDP/Rhw	210
BBDR/Rhw	210
BC/CpbU	210
BDIX/Han	210
BDVII/Cub	210
BN-Lx/Cub	208
BN/SsNHsd	208
BP/Cub	210
BUF/Pit	218
COP/OlaHsd	210
DA/PitN	218

DON/Melb	218
F344/Pit	218
FHH/Eur	208
GH/Omr	210
GK/KyoSwe	210
IS/Kyo	232
LE/Mol	210
LEW/Pit	210
LH/Mav	210
LN/Mav	208
LOU/CHan	210
M520/N	210
MHS/Gib	210

MNR/N	210
MNRA/N	210
MNS/Gib	210
MR/Pit	210
NEDH/K	218
NP9	210
ODU/N	230
OKA/Wsl	230
OM/Ztm	210
P5C	210
PVG/Pit	218
SD/Rij	218
SHR/OlaHsd	228

SHRSP/Riv	230
SR/Jr	218
SS/Jr	208
WAG/RijKyo	216
WF/Pit	210
WIST/Nhg	208
WKY/OlaHsd	230
WN/N	210
WTC/Kyo	230

Region

Nucleotide Sequences


GenBank Nucleotide	CH473950	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CM000237	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Additional Information

External Database Links

Database	Acc Id	Source(s)
NCBI Gene	100302944	UniSTS
	100303070	UniSTS
	100303077	UniSTS
	100303141	UniSTS
	100303273	UniSTS
	300095	UniSTS
	369184	UniSTS
UniSTS	122367	UniSTS

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Marker: D7Rat78