D4Rat84 Marker Search Result - Rat Genome Database

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Marker: D4Rat84

Symbol: D4Rat84
Previously known as: oxsts7124; R048-A12; R0048-A12; 
RGD ID: 37340
Expected Size: 115 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr84182,430,496 - 182,430,611 (+)Marker Load Pipeline
mRatBN7.24180,699,020 - 180,699,135 (+)MAPPERmRatBN7.2
Rnor_6.04182,170,904 - 182,171,018NCBIRnor6.0
Rnor_5.04246,313,423 - 246,313,537UniSTSRnor5.0
RGSC_v3.44185,398,416 - 185,398,530UniSTSRGSC3.4
RGSC_v3.44185,398,415 - 185,398,530RGDRGSC3.4
RGSC_v3.14185,643,540 - 185,643,654RGD
Celera4169,180,864 - 169,180,990UniSTS
RH 3.4 Map41096.4RGD
RH 3.4 Map41096.4UniSTS
SHRSP x BN Map499.9RGD
SHRSP x BN Map499.9UniSTS
FHH x ACI Map4113.49RGD
Is Marker For: Strains:   ACI/N   BBDR/Rhw   BBDP/Rhw   BC/CpbU   BDIX/Han   BN-Lx/Cub   BN/SsNHsd   BP/Cub   BUF/Pit   DA/PitN   FHH/Eur   F344/Pit   GH/Omr   GK/KyoSwe   DON/Melb   M520/N   IS/Kyo   WN/N   LH/Mav   LE/Mol   LEW/Pit   LOU/CHan   MHS/Gib   MNR/N   MNS/Gib   NP9   ODU/N   OKA/Wsl   OM/Ztm   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   SR/Jr   SHRSP/Riv   WAG/RijKyo   WF/Pit   WIST/Nhg   WKY/OlaHsd   WTC/Kyo   DA.PVG.1AV1-(D4Mit22-D4Rat84)/Kiru   PVG.1AV1.DA-(D4Mgh17-D4Rat84)/Kiru   DA.PVG.1AV1-(D4Rat63-D4Rat84)/Kiru   DA.PVG.1AV1-(D4Rat155-D4Rat84)  
QTLs:   Bmd12   Gluco58  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer TAGCAGAGGACACATGCACG
Reverse Primer AGTGCACTTCGGATTTGGAG
 
Template 
GCATGCCTGCAGGTCGACTCTAGAGGATCCCCCCTCTGACATAGTGTTTCAACTTTATATTATA
GAAGAAGCAACTCATGCTTAGGATAGTGCACTTCGGATTTGGAGAGTTCAGATTTTTACTCAGT
CTAGGGATGTGTGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGCGCAGCGCGTGCATGTGTCCTCTGCTATG

Region

Nucleotide Sequences
GenBank Nucleotide CH473964 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000234 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
6478754Anxrr43Anxiety related response QTL 430.14035locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4144639524182687754Rat
6478693Anxrr32Anxiety related response QTL 320.00092locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4144639524182687754Rat
2293659Bmd35Bone mineral density QTL 354.50.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)4137755016181392681Rat
1578674Bmd12Bone mineral density QTL 123.8femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)4135699135180699135Rat
10401796Kidm48Kidney mass QTL 48kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)4145568712182687754Rat
6478718Anxrr34Anxiety related response QTL 340.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
6478748Anxrr42Anxiety related response QTL 420.28008locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
6478700Anxrr33Anxiety related response QTL 330.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
1300109Rf13Renal function QTL 133.91renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)4157710145182687754Rat
10053718Scort25Serum corticosterone level QTL 252.150.0097blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)4155561574182687754Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene 100302821 UniSTS
  100381190 UniSTS