D15Rat52 Marker Search Result - Rat Genome Database

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Marker: D15Rat52

Symbol: D15Rat52
Previously known as: oxsts6282; R0054-C06; 
RGD ID: 37308
Expected Size: 220 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01539,480,797 - 39,481,017NCBIRnor6.0
Celera1532,875,574 - 32,875,793UniSTS
RH 3.4 Map15216.2UniSTS
RH 3.4 Map15216.2RGD
RH 2.0 Map15188.4RGD
SHRSP x BN Map1527.8499RGD
FHH x ACI Map1529.96RGD
Is Marker For: Strains:   ACI/N   AVN/Orl   BBDR/Rhw   BBDP/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BN-Lx/Cub   BP/Cub   BUF/Pit   COP/OlaHsd   DA/PitN   FHH/Eur   F344/Pit   GH/Omr   GK/KyoSwe   DON/Melb   M520/N   IS/Kyo   WN/N   LH/Mav   LE/Mol   LEW/Pit   LOU/CHan   LN/Mav   MHS/Gib   MNR/N   MNRA/N   MNS/Gib   MR/Pit   NEDH/K   NP9   ODU/N   OKA/Wsl   OM/Ztm   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   SR/Jr   SHRSP/Riv   SS/Jr   WAG/RijKyo   WF/Pit   WIST/Nhg   WKY/OlaHsd   WTC/Kyo  
QTLs:   Lecl2   Bw163   Scort14  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5. UniSTS Pipeline RGD automated pipelines
6. RH Map Project RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
7. A high density integrated genetic linkage and radiation hybrid map of the laboratory rat Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8

Strains and Sequence

Sequence
 
Forward Primer AAACCCGTTCCCAAGATTCT
Reverse Primer GAATTGCGTGAAGCAGTCAA
 
Template 
ATCNNAGGATCCCCACATTTGATTTATTTGTTACCAACAGACTCAAGAATTGCGTGAAGCAGTC
AACAAGCCAAGAAGGCAGGGCTTGGATAGAAATTCACAGGAAGGTTTAGAGAGCTGTGTTCACC
GGGACACGAGAAGGTCACTGTCACACACACACACACACACACACACACACACACACAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACTGCTTCTTCCCTTCAGAAAGAATCTTGG
GAACGGGTTTAAAAAGCTTCGTGAGGTCCCAGATGTGGTACCGAGCTCGAATTCGTAATCATGG
TCATAGCTGTTTCCTGTGTGAAATTGTTAGCCGCTCACAATTCCACACAACATACGAGCCGGAA
GCATAAAGTGTANAGCCTGGGGTGCCTAATGAGTGAGCTAACTCACATTAGTTGCGTTGCGCTC
ACTGCCCGCTTTCCAGTCGGGAAACTGTCGTGCCACTGCATTAATGNTCGGCACGCGCGGGGAG
AGGCG

Region

Nucleotide Sequences
GenBank Nucleotide CH474049 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
NCBI Gene 369062 UniSTS