D3Rat103 Marker Search Result - Rat Genome Database

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General

Marker: D3Rat103

Symbol:

D3Rat103

Previously known as:

oxsts6924; R0053-D10;

RGD ID:

37282

Expected Size:

172 (bp)

Position

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	45,390,714 - 45,390,751 (+)	MAPPER	mRatBN7.2
mRatBN7.2	3	45,390,714 - 45,390,886 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	46,995,471 - 46,995,507	NCBI	Rnor6.0
Rnor_6.0	3	46,995,471 - 46,995,642	NCBI	Rnor6.0
Rnor_5.0	3	52,103,176 - 52,103,212	UniSTS	Rnor5.0
Rnor_5.0	3	52,103,176 - 52,103,347	UniSTS	Rnor5.0
RGSC_v3.4	3	42,634,072 - 42,634,243	UniSTS	RGSC3.4
RGSC_v3.4	3	42,634,071 - 42,634,243	RGD	RGSC3.4
RGSC_v3.4	3	42,634,072 - 42,634,108	UniSTS	RGSC3.4
RGSC_v3.1	3	42,530,430 - 42,530,820	RGD
Celera	3	45,084,876 - 45,084,912	UniSTS
Celera	3	45,084,876 - 45,085,045	UniSTS
RH 2.0 Map	3	364.0	RGD
SHRSP x BN Map	3	32.8199	RGD
FHH x ACI Map	3	31.65	RGD
Cytogenetic Map	3	q21	UniSTS

Is Marker For:

Strains: AVN/Orl BBDP/Rhw BDIX/Han BDVII/Cub BN/SsNHsd BP/Cub BUF/Pit COP/OlaHsd DA/PitN FHH/Eur F344/Pit GH/Omr GK/KyoSwe DON/Melb M520/N IS/Kyo WN/N LH/Mav LOU/CHan LN/Mav MHS/Gib MNR/N MNRA/N MNS/Gib MR/Pit NEDH/K NP9 ODU/N OKA/Wsl OM/Ztm P5C PVG/Pit SD/Rij SHR/OlaHsd SR/Jr SHRSP/Riv SS/Jr WAG/RijKyo WF/Pit WIST/Nhg WKY/OlaHsd WTC/Kyo
Genes: Rbms1

Annotation

References - curated

#	Reference Title	Reference Citation
1.	Data downloaded from Wellcome Trust, University of Oxford	Data downloaded from Wellcome Trust, University of Oxford
2.	Rat Genetic Map Data	Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3.	Electronic Transfer of SSLP Data	Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4.	UniSTS Pipeline	RGD automated pipelines
5.	RH Map Project	RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
6.	A high density integrated genetic linkage and radiation hybrid map of the laboratory rat	Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8

Strains and Sequence

Sequence


Forward Primer	TCTTGTTGATTAGGCCCAGC
Reverse Primer	ACATGATCCAAGCCTGTGCT

Strain Variation

Strain, Expected Size(s)

AVN/Orl	170
BBDP/Rhw	170
BDIX/Han	172
BDVII/Cub	170
BN/SsNHsd	170
BP/Cub	160
BUF/Pit	170
COP/OlaHsd	166
DA/PitN	168
DON/Melb	170
F344/Pit	170

FHH/Eur	164
GH/Omr	170
GK/KyoSwe	170
IS/Kyo	160
LH/Mav	164
LN/Mav	164
LOU/CHan	170
M520/N	166
MHS/Gib	164
MNR/N	170
MNRA/N	170

MNS/Gib	164
MR/Pit	170
NEDH/K	170
NP9	172
ODU/N	170
OKA/Wsl	168
OM/Ztm	164
P5C	170
PVG/Pit	160
SD/Rij	170
SHR/OlaHsd	168

SHRSP/Riv	168
SR/Jr	166
SS/Jr	164
WAG/RijKyo	170
WF/Pit	164
WIST/Nhg	170
WKY/OlaHsd	170
WN/N	170
WTC/Kyo	170

Region

Nucleotide Sequences


GenBank Nucleotide	CH473949	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CM000233	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Additional Information

External Database Links

Database	Acc Id	Source(s)
NCBI Gene	362138	UniSTS

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Marker: D3Rat103