D6Rat1 Marker Search Result - Rat Genome Database

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Marker: D6Rat1

Symbol: D6Rat1
Previously known as: R0048-C11; oxsts7250; R048-C11; 
RGD ID: 37076
Expected Size: 232 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26137,801,573 - 137,801,795 (+)MAPPERmRatBN7.2
Rnor_6.06144,745,354 - 144,745,573NCBIRnor6.0
Rnor_5.06153,671,821 - 153,672,040UniSTSRnor5.0
RGSC_v3.46144,152,353 - 144,152,572UniSTSRGSC3.4
RGSC_v3.46144,152,352 - 144,152,572RGDRGSC3.4
RGSC_v3.16144,158,540 - 144,158,759RGD
Celera6135,457,174 - 135,457,393UniSTS
RH 3.4 Map6924.0RGD
RH 3.4 Map6924.0UniSTS
RH 2.0 Map61203.5RGD
SHRSP x BN Map682.8898RGD
FHH x ACI Map695.64RGD
Cytogenetic Map6q33UniSTS
Is Marker For: Strains:   AVN/Orl   BBDR/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BP/Cub   BUF/Pit   DA/PitN   DON/Melb   F344/Pit   FHH/Eur   IS/Kyo   LE/Mol   LEW/Pit   LH/Mav   MHS/Gib   MNRA/N   WN/N   WKY/OlaHsd   WTC/Kyo   LOU/CHan   MNR/N   MR/Pit   ODU/N   WF/Pit   WIST/Nhg   SR/Jr   MNS/Gib   NP9   OKA/Wsl   OM/Ztm   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   SHRSP/Riv   WAG/RijKyo   M520/N   ACI/N   BN-Lx/Cub   LN/Mav   GH/Omr   NEDH/K   SS/Jr   COP/OlaHsd   MWF.SHR-(D6Rat1-D6Rat30)/Rkb   MWF.SHR-(D6Rat1-D6Rat106)/Rkb   MWF.SHR-(D6Rat1-D6Mit8)/Rkb   MWF.SHR-(D6Rat1-D6Rat184)/Rkb   MWF.SHR-(D6Rat1-D6Rat121)/Rkb   MWF.SHR-(D6Rat1-D6Mgh4)/Rkb   MWF.SHR-(D6Rat1-D6Rat81)/Rkb   MWF.SHR-(D6Rat1-D6Rat115)/Rkb  
QTLs:   Colcr5   Iddm29   Pur20  
Genes:   Ptprn2  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5. UniSTS Pipeline RGD automated pipelines
6. RH Map Project RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
7. A high density integrated genetic linkage and radiation hybrid map of the laboratory rat Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8

Strains and Sequence

Sequence
 
Forward Primer CGCTGTCTCCTCTTCATTCC
Reverse Primer GACACAGACACAGTCCCCCT
 
Template
TGCATGCCTGCAGGTCGACTCTAGAGGATCCCCCTAAGAACTCCTTGACGTTGTTGTTCCTGGT
AAGGGTCCCTTCTGCAGACACAGACACAGTCCCCCTGGAGCACCTGCTAGTCACTGTGCTCTGG
CCATTGGCATCTGCCAGGCATTGTCCAGTTGTGCTCTCTCTCTCTCTCNCTCTTNNNTNTNCTC
TCTCTCTCCCTCTCCCTGCCTCCTGACACACACACACACACACACACACACACACACACACACA
CACACACACAGAGTCTTTAGATCATGGGAATGAAGAGGAGACAGCGACAGGGGTACCGAGCTCG
AATTCGTAATCATGGTCATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATTCCACACA
ACATACGAGCCGGAAGCATAAAGTGTAAAGCCTGGGGTGCCTAATGAGTGAGCTAACTCACATT
AATTGCGTCGCGCTCACTGCCCGCTTTCCAGTCGGGAAACCTGTCGTGCCAGCTGCATTAATGA
ATCGGCCAACGCGCGGGGAGAGGCGGTNTGCGTATTGGGCGCCAGGGTGGTTTTNCTTTTCACA
GTGAGAGNGCAAANCTGATNCCCTTCACGNNGGNCTGAGAGAGTTGCAGNAGNGTCANT

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
61904Ptprn2protein tyrosine phosphatase, receptor type N26137439572138191575Rat

Nucleotide Sequences
GenBank Nucleotide CH474038 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
731173Uae22Urinary albumin excretion QTL 2210.1urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
2290393Uae37Urinary albumin excretion QTL 370.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
61414Pia3Pristane induced arthritis QTL 34.5joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)694968928137848904Rat
12801411Schws8Schwannoma susceptibility QTL 8nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)694968928139968928Rat
8552796Vie3Viral induced encephalitis QTL 32.6brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)696833997140994061Rat
1358355Srcrt4Stress Responsive Cort QTL 46.39blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)6100364669140994061Rat
71111Iddm8Insulin dependent diabetes mellitus QTL 81.90.002blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)6105156861140994061Rat
737976Pia24Pristane induced arthritis QTL 24joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)6112636280140994061Rat
1641917Colcr5Colorectal carcinoma resistance QTL 53.180.0009intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)6122549046137801795Rat
2293085Iddm29Insulin dependent diabetes mellitus QTL 297.66blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)6122549046140286318Rat
61329Eae9Experimental allergic encephalomyelitis QTL 93.7body mass (VT:0001259)change in body weight (CMO:0002045)6122549046140994061Rat
2312560Pur20Proteinuria QTL 202.10.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)6125628133137801795Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene 100302911 UniSTS
  100302928 UniSTS
  100303440 UniSTS
  29714 UniSTS
UniSTS 118945 UniSTS