D1Rat71 Marker Search Result - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

Marker: D1Rat71

Symbol: D1Rat71
Previously known as: oxsts6734; R044-C02; R0044-C02; 
RGD ID: 36757
Expected Size: 146 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21210,702,053 - 210,702,199 (+)MAPPERmRatBN7.2
Rnor_6.01230,420,627 - 230,420,772NCBIRnor6.0
Rnor_5.01237,556,833 - 237,556,978UniSTSRnor5.0
RGSC_v3.41216,662,939 - 216,663,271RGDRGSC3.4
RGSC_v3.41216,663,010 - 216,663,155UniSTSRGSC3.4
Celera1208,101,082 - 208,101,227UniSTS
RGSC_v3.11216,821,440 - 216,821,585RGD
RH 3.4 Map11492.9RGD
RH 3.4 Map11492.9UniSTS
SHRSP x BN Map1108.27RGD
SHRSP x BN Map1108.27UniSTS
FHH x ACI Map1102.12RGD
Is Marker For: Strains:   ACI/N   AVN/Orl   BBDR/Rhw   BBDP/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BN-Lx/Cub   BN/SsNHsd   BP/Cub   BUF/Pit   COP/OlaHsd   DA/PitN   FHH/Eur   F344/Pit   GH/Omr   DON/Melb   M520/N   IS/Kyo   WN/N   LH/Mav   LE/Mol   LEW/Pit   LOU/CHan   LN/Mav   MHS/Gib   MNR/N   MNS/Gib   MR/Pit   NEDH/K   NP9   ODU/N   OKA/Wsl   OM/Ztm   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   SR/Jr   SHRSP/Riv   SS/Jr   WAG/RijKyo   WF/Pit   WIST/Nhg   WKY/OlaHsd   WTC/Kyo  
QTLs:   Stl25   Bp260   Bp259   Kidm22  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer GTACACCGGTCAGGTCAGGT
Reverse Primer TCTCTCCTTCTTCTTTACTGCCA
 
Template 
AGGATCCCCCTCCTCCATTTTATTTTTATTCATTTCATTGTAAATTTTATACAGGAACACTATC
TTATTAACTTCTCTCCTTCTTCTTTACTGCCATCTTCTACCTACTTCCTCTCAAATTCATGACT
TTCTTTTATGCTTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTATACCTGACCTGACCGGTGTACGGTATGGAATAACTAACNAATTGGAGGTTTGTCCCAG
GAGTAAATTTGTTCTTNTCTTTCANCACCCATTNCCATATCTTATAAATTGNNGTGACAATTGT
NTATGGAAATTTAAGGGTACCGNGCTCGAATTNCGT

Region

Nucleotide Sequences
GenBank Nucleotide AC117862 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
NCBI Gene 100302759 UniSTS
  100302761 UniSTS
  100302772 UniSTS
  544408 UniSTS