D14Rat12 Marker Search Result - Rat Genome Database

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Marker: D14Rat12

Symbol: D14Rat12
Previously known as: R0034-B07; oxsts6192; R034-B07; 
RGD ID: 36287
Expected Size: 153 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21439,153,581 - 39,153,750 (-)MAPPERmRatBN7.2
Rnor_6.01461,783,047 - 61,783,215NCBIRnor6.0
Rnor_5.01461,886,249 - 61,886,417UniSTSRnor5.0
RGSC_v3.41441,707,423 - 41,707,592RGDRGSC3.4
RGSC_v3.41441,707,424 - 41,707,592UniSTSRGSC3.4
RGSC_v3.11441,709,814 - 41,709,983RGD
Celera1438,346,383 - 38,346,551UniSTS
RH 2.0 Map14500.7RGD
SHRSP x BN Map1427.1799RGD
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BN/SsNHsd   BP/Cub   BUF/Pit   DA/PitN   DON/Melb   F344/Pit   FHH/Eur   IS/Kyo   LE/Mol   LEW/Pit   LH/Mav   MHS/Gib   MNRA/N   WN/N   WKY/OlaHsd   WTC/Kyo   LOU/CHan   MNR/N   MR/Pit   ODU/N   WF/Pit   WIST/Nhg   SR/Jr   MNS/Gib   NP9   OKA/Wsl   OM/Ztm   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   SHRSP/Riv   WAG/RijKyo   GK/KyoSwe   M520/N   ACI/N   BN-Lx/Cub   LN/Mav   F344.OLETF-(D14Rat23-D14Rat12)/Tj   GH/Omr   NEDH/K   SS/Jr   COP/OlaHsd   F344.ZUC-Leprfa(D14Rat23-D14Rat12)/Tj   F344.OLETF-(D14Rat8-D14Rat12)/Tj   F344.OLETF-(D14Rat55-D14Rat12)/Tj   F344.OLETF-(D14Wox1-D14Rat12)/Tj   F344.OLETF-(D14Rat12)/Tj   F344.OLETF-(D14Rat143-D14Rat12)/Tj   F344.OLETF-(D14Rat5-D14Rat12)/Tj   F344.OLETF-(D14Wox14-D14Rat12)/Tj   F344.ZUC-(Leprfa),OLETF-(D14Rat23-D14Rat12)/Tj  
QTLs:   Bp189   Coatc2  


Annotation



Strains and Sequence

Sequence
 
Forward Primer GGCTTGCTTTATCCACCAAA
Reverse Primer GGACCATGGAGTTGATGAGAA
 
Template
ATCGATCTAGAGGATCCCCCTTGGACAGGTTAGGAAAACAGAAGAGGACCATGGAGTTGATGAG
AAAAGTCAGCAGACTTTTTCTCTGAGGAAGCAAAACTTAATTTTCTGGGGCCAGTAAAAAAGCA
GAAACACACACACACACACACACACACACACACATGCATACGGATTTGGTGGATAAAGCAAGCC
TCAGCAAGGGGTACCGAGCTCGAATTCGTAATCATGGTCATAGCTGTTTCCTGTGTGAAATTGT
TATCCGCTCACAATTCCACACAACATACGAGCCGGAAGCATAAAGTGTAAAGCCTGGGGTGCCT
AATGAGTGAGCTAACTCACATTAATTGCGTTGCGCTCACTGCCCGCTTTCCAGTCGGGAAACCT
GTCGTGCCAGCTGCATTAATGAATCGGCCAACGCGCGGGGAGAGGCGGTTTGCGTATTGGGCGC
CAGGGTGGTTTTTCTTTTCACCAGTGAGACGGGCAACAGCTGATTGCCCTTCACCGCCTGGCCC
TGAGAGAGTTGCAGCAAGCGGTCCACGCTGGTTTGCCCAGCAGGCGAAAATCCTGTTTGATGGT
GGTTCGAAATCGGCAAAATNCTTATAATCAAAAATAGNCGANTGGGTTGA

Region

Nucleotide Sequences
GenBank Nucleotide CH473981 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
634352Apr6Acute phase response QTL 63.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)14141131407Rat
1581500Renag1Renal agenesis QTL 1kidney development trait (VT:0000527)percentage of study population developing unilateral renal agenesis during a period of time (CMO:0000940)14817066868298175Rat
1358296Ael3Aortic elastin QTL 33.70.00051aorta elastin amount (VT:0003905)aortic elastin14826709053267090Rat
2302045Pia39Pristane induced arthritis QTL 394.90.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G2a level (CMO:0002116)14826709053267090Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141103062295876975Rat
71117Niddm17Non-insulin dependent diabetes mellitus QTL 172.35blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)141759376142336881Rat
631262Tcas4Tongue tumor susceptibility QTL 47.29tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)141762256142337007Rat
2313397Coatc1Coat color QTL1coat/hair pigmentation trait (VT:0010463)coat/hair color measurement (CMO:0001808)141854133263541332Rat
61420Pia6Pristane induced arthritis QTL 64.9joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)141863134542337007Rat
10755459Coatc15Coat color QTL 150.01681coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)141983694464836944Rat
70187Pancm5Pancreatic morphology QTL 516.7pancreas mass (VT:0010144)pancreas weight to body weight ratio (CMO:0000630)143032009280829842Rat
2324617Coatc2Coat color QTL 20.001coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)143076702539153750Rat
1300154Bp189Blood pressure QTL 1893.04arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)143088377768757901Rat
2313048Bss84Bone structure and strength QTL 843.10.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143766971982669719Rat
2313084Bss83Bone structure and strength QTL 832.90.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143766971982669719Rat
2313089Bss81Bone structure and strength QTL 813.40.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)143766971982669719Rat
2313100Bss82Bone structure and strength QTL 8230.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143766971982669719Rat
738037Hcas6Hepatocarcinoma susceptibility QTL 62.93liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)143905723783368335Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene 100431183 UniSTS
  444953 UniSTS
UniSTS 118353 UniSTS