D14Rat12 Marker Search Result - Rat Genome Database

	Submit Data \| Help \| Video Tutorials \| News \| Publications \| Download \| REST API \| Citing RGD \| Contact
	Search RGD Grant Resources Citing RGD About Us Contact Us Genes Community Projects (beta) QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) (beta) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer) Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease Find Models new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive Pathways Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
	Advanced Search (OLGA)

General

Marker: D14Rat12

Symbol:

D14Rat12

Previously known as:

R0034-B07; oxsts6192; R034-B07;

RGD ID:

36287

Expected Size:

153 (bp)

Position

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	39,153,581 - 39,153,750 (-)	MAPPER	mRatBN7.2
Rnor_6.0	14	61,783,047 - 61,783,215	NCBI	Rnor6.0
Rnor_5.0	14	61,886,249 - 61,886,417	UniSTS	Rnor5.0
RGSC_v3.4	14	41,707,423 - 41,707,592	RGD	RGSC3.4
RGSC_v3.4	14	41,707,424 - 41,707,592	UniSTS	RGSC3.4
RGSC_v3.1	14	41,709,814 - 41,709,983	RGD
Celera	14	38,346,383 - 38,346,551	UniSTS
RH 2.0 Map	14	500.7	RGD
SHRSP x BN Map	14	27.1799	RGD

Is Marker For:

Strains: ACI/N AVN/Orl BBDP/Rhw BC/CpbU BDIX/Han BDVII/Cub BN-Lx/Cub BN/SsNHsd BP/Cub BUF/Pit COP/OlaHsd DA/PitN FHH/Eur F344/Pit GH/Omr GK/KyoSwe DON/Melb M520/N IS/Kyo WN/N LH/Mav LE/Mol LEW/Pit LOU/CHan LN/Mav MHS/Gib MNR/N MNRA/N MNS/Gib MR/Pit NEDH/K NP9 ODU/N OKA/Wsl OM/Ztm P5C PVG/Pit SD/Rij SHR/OlaHsd SR/Jr SHRSP/Riv SS/Jr WAG/RijKyo WF/Pit WIST/Nhg WKY/OlaHsd WTC/Kyo F344.OLETF-(D14Rat12)/Tj F344.OLETF-(D14Rat23-D14Rat12)/Tj F344.ZUC-(Lepr^fa),OLETF-(D14Rat23-D14Rat12)/Tj F344.ZUC-Lepr^fa(D14Rat23-D14Rat12)/Tj F344.OLETF-(D14Rat8-D14Rat12)/Tj F344.OLETF-(D14Rat55-D14Rat12)/Tj F344.OLETF-(D14Wox1-D14Rat12)/Tj F344.OLETF-(D14Rat143-D14Rat12)/Tj F344.OLETF-(D14Rat5-D14Rat12)/Tj F344.OLETF-(D14Wox14-D14Rat12)/Tj
QTLs: Bp189 Coatc2

Annotation

References - curated

#	Reference Title	Reference Citation
1.	Data downloaded from Wellcome Trust, University of Oxford	Data downloaded from Wellcome Trust, University of Oxford
2.	Rat Genetic Map Data	Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3.	Electronic Transfer of SSLP Data	Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4.	UniSTS Pipeline	RGD automated pipelines
5.	RH Map Project	RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
6.	A high density integrated genetic linkage and radiation hybrid map of the laboratory rat	Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8

Strains and Sequence

Sequence


Forward Primer	GGCTTGCTTTATCCACCAAA
Reverse Primer	GGACCATGGAGTTGATGAGAA

Template	ATCGATCTAGAGGATCCCCCTTGGACAGGTTAGGAAAACAGAAGAGGACCATGGAGTTGATGAG AAAAGTCAGCAGACTTTTTCTCTGAGGAAGCAAAACTTAATTTTCTGGGGCCAGTAAAAAAGCA GAAACACACACACACACACACACACACACACACATGCATACGGATTTGGTGGATAAAGCAAGCC TCAGCAAGGGGTACCGAGCTCGAATTCGTAATCATGGTCATAGCTGTTTCCTGTGTGAAATTGT TATCCGCTCACAATTCCACACAACATACGAGCCGGAAGCATAAAGTGTAAAGCCTGGGGTGCCT AATGAGTGAGCTAACTCACATTAATTGCGTTGCGCTCACTGCCCGCTTTCCAGTCGGGAAACCT GTCGTGCCAGCTGCATTAATGAATCGGCCAACGCGCGGGGAGAGGCGGTTTGCGTATTGGGCGC CAGGGTGGTTTTTCTTTTCACCAGTGAGACGGGCAACAGCTGATTGCCCTTCACCGCCTGGCCC TGAGAGAGTTGCAGCAAGCGGTCCACGCTGGTTTGCCCAGCAGGCGAAAATCCTGTTTGATGGT GGTTCGAAATCGGCAAAATNCTTATAATCAAAAATAGNCGANTGGGTTGA

Strain Variation

Strain, Expected Size(s)

ACI/N	156
AVN/Orl	156
BBDP/Rhw	150
BC/CpbU	156
BDIX/Han	152
BDVII/Cub	150
BN-Lx/Cub	168
BN/SsNHsd	172
BP/Cub	172
BUF/Pit	156
COP/OlaHsd	162
DA/PitN	150

DON/Melb	156
F344/Pit	156
FHH/Eur	156
GH/Omr	150
GK/KyoSwe	150
IS/Kyo	150
LE/Mol	150
LEW/Pit	150
LH/Mav	156
LN/Mav	156
LOU/CHan	156
M520/N	156

MHS/Gib	150
MNR/N	156
MNRA/N	150,156
MNS/Gib	158
MR/Pit	156
NEDH/K	150
NP9	170
ODU/N	150
OKA/Wsl	150
OM/Ztm	156
P5C	150
PVG/Pit	150

SD/Rij	170
SHR/OlaHsd	150
SHRSP/Riv	150
SR/Jr	150
SS/Jr	150
WAG/RijKyo	150
WF/Pit	150
WIST/Nhg	158
WKY/OlaHsd	150
WN/N	150
WTC/Kyo	150

Region

Nucleotide Sequences


GenBank Nucleotide	CH473981	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
634352	Apr6	Acute phase response QTL 6	3.7		blood interleukin-6 amount (VT:0008595)	plasma interleukin-6 level (CMO:0001927)	14	1	41131407	Rat
1581500	Renag1	Renal agenesis QTL 1			kidney development trait (VT:0000527)	percentage of study population developing unilateral renal agenesis during a period of time (CMO:0000940)	14	8170668	68298175	Rat
1358296	Ael3	Aortic elastin QTL 3	3.7	0.00051	aorta elastin amount (VT:0003905)	aortic elastin	14	8267090	53267090	Rat
2302045	Pia39	Pristane induced arthritis QTL 39	4.9	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G2a level (CMO:0002116)	14	8267090	53267090	Rat
631839	Niddm37	Non-insulin dependent diabetes mellitus QTL 37	3.37		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	11030622	95876975	Rat
71117	Niddm17	Non-insulin dependent diabetes mellitus QTL 17	2.35		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	14	17593761	42336881	Rat
631262	Tcas4	Tongue tumor susceptibility QTL 4	7.29		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	14	17622561	42337007	Rat
2313397	Coatc1	Coat color QTL1			coat/hair pigmentation trait (VT:0010463)	coat/hair color measurement (CMO:0001808)	14	18541332	63541332	Rat
61420	Pia6	Pristane induced arthritis QTL 6	4.9		joint integrity trait (VT:0010548)	arthritic paw count (CMO:0001460)	14	18631345	42337007	Rat
10755459	Coatc15	Coat color QTL 15		0.01681	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	14	19836944	64836944	Rat
70187	Pancm5	Pancreatic morphology QTL 5	16.7		pancreas mass (VT:0010144)	pancreas weight to body weight ratio (CMO:0000630)	14	30320092	80829842	Rat
2324617	Coatc2	Coat color QTL 2		0.001	coat/hair pigmentation trait (VT:0010463)	pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)	14	30767025	39153750	Rat
1300154	Bp189	Blood pressure QTL 189	3.04		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	14	30883777	68757901	Rat
2313048	Bss84	Bone structure and strength QTL 84	3.1	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	14	37669719	82669719	Rat
2313084	Bss83	Bone structure and strength QTL 83	2.9	0.0001	tibia size trait (VT:0100001)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	14	37669719	82669719	Rat
2313089	Bss81	Bone structure and strength QTL 81	3.4	0.0001	body length (VT:0001256)	body length, nose to rump (CMO:0000079)	14	37669719	82669719	Rat
2313100	Bss82	Bone structure and strength QTL 82	3	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	14	37669719	82669719	Rat
738037	Hcas6	Hepatocarcinoma susceptibility QTL 6	2.93		liver integrity trait (VT:0010547)	liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)	14	39057237	83368335	Rat

Additional Information

External Database Links

Database	Acc Id	Source(s)
NCBI Gene	100431183	UniSTS
	444953	UniSTS
UniSTS	118353	UniSTS

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Create Name:

Description:

Send us a Message

Marker: D14Rat12