D8Rat58 Marker Search Result - Rat Genome Database

Advanced Search (OLGA)

General

Marker: D8Rat58

Symbol:

D8Rat58

Previously known as:

R0029-C09; oxsts7463; R029-C09;

RGD ID:

36039

Expected Size:

174 (bp)

Position

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	3,402,115 - 3,402,289 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	3,442,181 - 3,442,354	NCBI	Rnor6.0
Rnor_5.0	8	3,460,092 - 3,460,265	UniSTS	Rnor5.0
RGSC_v3.4	8	3,039,649 - 3,039,822	UniSTS	RGSC3.4
RGSC_v3.4	8	3,039,648 - 3,039,822	RGD	RGSC3.4
RGSC_v3.1	8	3,039,399 - 3,039,894	RGD
Celera	8	4,981,140 - 4,981,313	UniSTS
RH 2.0 Map	8	0.0	RGD
SHRSP x BN Map	8	0.0	RGD

Is Marker For:

Strains: AVN/Orl BBDP/Rhw BBDR/Rhw BC/CpbU BDIX/Han BDVII/Cub BN/SsNHsd BP/Cub BUF/Pit DA/PitN DON/Melb F344/Pit FHH/Eur IS/Kyo LE/Mol LEW/Pit LH/Mav MHS/Gib MNRA/N WN/N WKY/OlaHsd WTC/Kyo LOU/CHan MNR/N MR/Pit WF/Pit WIST/Nhg SR/Jr MNS/Gib NP9 OKA/Wsl OM/Ztm P5C PVG/Pit SD/Rij SHR/OlaHsd SHRSP/Riv WAG/RijKyo GK/KyoSwe M520/N ACI/N BN-Lx/Cub LN/Mav GH/Omr NEDH/K SS/Jr COP/OlaHsd
QTLs: Niddm21 Alcrsp24

Annotation

References - curated

#	Reference Title	Reference Citation
1.	Data downloaded from Wellcome Trust, University of Oxford	Data downloaded from Wellcome Trust, University of Oxford
2.	Rat Genetic Map Data	Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3.	Electronic Transfer of SSLP Data	Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4.	UniSTS Pipeline	RGD automated pipelines
5.	RH Map Project	RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
6.	A high density integrated genetic linkage and radiation hybrid map of the laboratory rat	Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8

Strains and Sequence

Sequence


Forward Primer	CCTCCCTCCTTCTCTTCCTG
Reverse Primer	TTTCTAAGGTTCCAGCAAGAGTG

Template	GACGGCCAGTGCCAAGCTTGCATGCCTGCAGGTCGACTCTAGAGGATCCCCACATACCTAGCTT GACAAGTTTACTTGGGATTGGTTGATGGAGGAGAAAGCATAATCAATCAACAGTCATGATTTCT AAGGTTCCAGCAAGAGTGACACCACACCACACACACACACACACACACACACACACACACGCAC ACACACGCATACACACACACACACACACACACACACACACACACACACACACACCAGACAGAAA AAGGGAAGAGAGGAGAGAGGGCAGGAAGAGAAGGAGGGAGGGAGAAATGAAGAATACTTGGGAC TATAATGAAGAAAGCCCAAAGATCCACCTGAACCCTGTAGAAGGAGAGAACCCTCCACCCCCAG TCAGGTAGCTGATAACTACCTTACAAGCTTCTCCCAGGGTCTCACTTAGAGAAGTAAATATTCT TTGGGAAAATTAATGTAATGTCATATAACAGAAATTCATTAAAAAATTCTCTGTGGAAAAATCC ACTGCCAACTACTTCTTGAACTGCAATCTGTGTGGGTACGAGCTCGAATTCGTAATCATGGTCA TAGCT

Strain Variation

Strain, Expected Size(s)

ACI/N	167
AVN/Orl	167
BBDP/Rhw	172
BBDR/Rhw	172
BC/CpbU	167
BDIX/Han	168
BDVII/Cub	182
BN-Lx/Cub	168,172
BN/SsNHsd	172
BP/Cub	168,184
BUF/Pit	167
COP/OlaHsd	167

DA/PitN	167
DON/Melb	168
F344/Pit	167
FHH/Eur	172
GH/Omr	168
GK/KyoSwe	172
IS/Kyo	168,176
LE/Mol	168,188
LEW/Pit	167
LH/Mav	167
LN/Mav	174
LOU/CHan	167

M520/N	167
MHS/Gib	174
MNR/N	167
MNRA/N	174
MNS/Gib	174
MR/Pit	168
NEDH/K	174
NP9	168
OKA/Wsl	167
OM/Ztm	167
P5C	168
PVG/Pit	167

SD/Rij	168
SHR/OlaHsd	168
SHRSP/Riv	167
SR/Jr	168
SS/Jr	174
WAG/RijKyo	168
WF/Pit	168
WIST/Nhg	167
WKY/OlaHsd	174
WN/N	190
WTC/Kyo	168,174

Region

Nucleotide Sequences


GenBank Nucleotide	CH473993	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CM000238	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
71120	Niddm21	Non-insulin dependent diabetes mellitus QTL 21	3.73		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	8	1	3402289	Rat
12880023	Bw184	Body weight QTL 184		0.001	body mass (VT:0001259)	body weight (CMO:0000012)	8	2097640	47097640	Rat
9590084	Insglur5	Insulin/glucose ratio QTL 5	18.54	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	8	1	24597739	Rat
12880028	Cm103	Cardiac mass QTL 103		0.02	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	8	2097640	47097640	Rat
12880044	Am9	Aortic mass QTL 9		0.007	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	8	2097640	47097640	Rat
2317882	Alcrsp24	Alcohol response QTL 24	3.2	0.05	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	8	1	25902202	Rat
12880025	Cm102	Cardiac mass QTL 102		0.044	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	8	2097640	47097640	Rat

Additional Information

External Database Links

Database	Acc Id	Source(s)
NCBI Gene	100423056	UniSTS
	326566	UniSTS
UniSTS	119124	UniSTS

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Create Name:

Description:

Send us a Message

Marker: D8Rat58