D19Rat25 Marker Search Result - Rat Genome Database

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General

Marker: D19Rat25

Symbol:

D19Rat25

Previously known as:

oxsts6503; R020-A09; R0020-A09;

RGD ID:

35547

Expected Size:

104 (bp)

Position

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_5.0	19	43,355,283 - 43,355,397	NCBI	Rnor5.0
RGSC_v3.4	19	30,621,879 - 30,621,992	RGD	RGSC3.4
RGSC_v3.1	19	30,626,705 - 30,626,818	RGD
RH 2.0 Map	19	313.9	RGD
SHRSP x BN Map	19	20.2599	RGD
FHH x ACI Map	19	22.22	RGD
Cytogenetic Map	19		RGD

Is Marker For:

Strains: AVN/Orl BBDP/Rhw BBDR/Rhw BC/CpbU BDIX/Han BDVII/Cub BN/SsNHsd BP/Cub BUF/Pit DA/PitN DON/Melb F344/Pit FHH/Eur IS/Kyo LE/Mol LEW/Pit LH/Mav MHS/Gib MNRA/N WN/N WKY/OlaHsd WTC/Kyo LOU/CHan MNR/N MR/Pit ODU/N WF/Pit WIST/Nhg SR/Jr MNS/Gib NP9 OKA/Wsl OM/Ztm P5C PVG/Pit SD/Rij SHR/OlaHsd SHRSP/Riv WAG/RijKyo GK/KyoSwe M520/N ACI/N BN-Lx/Cub LN/Mav GH/Omr NEDH/K SS/Jr COP/OlaHsd
QTLs: Bmd5 Vencon9

Annotation

References - curated

#	Reference Title	Reference Citation
1.	Data downloaded from Wellcome Trust, University of Oxford	Data downloaded from Wellcome Trust, University of Oxford
2.	Rat Genetic Map Data	Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3.	Electronic Transfer of SSLP Data	Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4.	UniSTS Pipeline	RGD automated pipelines
5.	RH Map Project	RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
6.	A high density integrated genetic linkage and radiation hybrid map of the laboratory rat	Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8
7.	Electronic Submission of SSLP Data Sets	Wilder R. Oct.2000. National Institute of Arthritis and Musculoskeletal and Skin Diseases, ARB Rat Genetic Database

Strains and Sequence

Sequence


Forward Primer	CCAGCCCTTAGATGCAACTG
Reverse Primer	GAAAAACCTGGCATTTCAGG

Template	GTGNNGTGNNTNCTGGTGTTGTTGGNGNTGTGTGGTTNTGAGGTGTTTGGGTNAGTTGNGGTGN TTGNGATTNNGGAGTNTGCNGGTGTGNGNGTTGGNTATGAGTNTTTNGANNTATGGGATAGGAC CCATGGTNNGANAAAAANAGAGCTAGTANCATATNCTATGCCATGCCAGGTCAGNCATCTTAGN GGAACCCCCCAGCCCTTAGATGCAACTGTCACTATTTCAAAAAAAGTAGAACCAGTGTGTGTGT GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAANCCCTGAAATGCCAGGTTTTTCTNCCG CCATNTTC

Strain Variation

Strain, Expected Size(s)

ACI/N	102
AVN/Orl	114
BBDP/Rhw	114
BBDR/Rhw	114
BC/CpbU	102
BDIX/Han	102
BDVII/Cub	102
BN-Lx/Cub	114
BN/SsNHsd	116
BP/Cub	112
BUF/Pit	114
COP/OlaHsd	102
DA/PitN	102

DON/Melb	108
F344/Pit	108
FHH/Eur	108
GH/Omr	114
GK/KyoSwe	110
IS/Kyo	110
LE/Mol	96
LEW/Pit	114
LH/Mav	102
LN/Mav	102
LOU/CHan	102
M520/N	108
MHS/Gib	114

MNR/N	102
MNRA/N	102
MNS/Gib	114
MR/Pit	102
NEDH/K	114
NP9	114
ODU/N	114
OKA/Wsl	102
OM/Ztm	108
P5C	114
PVG/Pit	114
SD/Rij	102
SHR/OlaHsd	102

SHRSP/Riv	102
SR/Jr	102
SS/Jr	102
WAG/RijKyo	114
WF/Pit	102
WIST/Nhg	114
WKY/OlaHsd	114
WN/N	114
WTC/Kyo	114

Region

Nucleotide Sequences

Additional Information

RGD Curation Notes

Note Type	Note	Reference

External Database Links

Database	Acc Id	Source(s)
NCBI Gene	100303004	UniSTS
	100303025	UniSTS
UniSTS	119563	UniSTS

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Marker: D19Rat25