Marker: D9Rat35 |
| Symbol: |
D9Rat35 |
| Previously known as: |
oxsts7523; R016-D05; R0016-D05;
|
| RGD ID: |
35439 |
| Expected Size: |
133 (bp) |
| Position |
| Rat Assembly | Chr | Position (strand) | Source | JBrowse |
|---|
GRCr8 | 9 | 24,717,838 - 24,717,971 (+) | Marker Load Pipeline | | mRatBN7.2 | 9 | 17,220,476 - 17,220,609 (+) | MAPPER | mRatBN7.2 | Rnor_6.0 | 9 | 19,794,101 - 19,794,233 | NCBI | Rnor6.0 | Rnor_5.0 | 9 | 18,672,124 - 18,672,256 | UniSTS | Rnor5.0 | RGSC_v3.4 | 9 | 12,916,128 - 12,916,260 | UniSTS | RGSC3.4 | RGSC_v3.4 | 9 | 12,916,127 - 12,916,260 | RGD | RGSC3.4 | Celera | 9 | 14,944,299 - 14,944,431 | UniSTS | | RGSC_v3.1 | 9 | 12,913,450 - 12,913,582 | RGD | | RH 3.4 Map | 9 | 107.0 | UniSTS | | RH 3.4 Map | 9 | 107.0 | RGD | | RH 2.0 Map | 9 | 110.1 | RGD | | SHRSP x BN Map | 9 | 15.0998 | RGD | |
|
| Is Marker For: |
Strains:
AVN/Orl
BBDP/Rhw
BBDR/Rhw
BC/CpbU
BDIX/Han
BDVII/Cub
BN/SsNHsd
BP/Cub
BUF/Pit
DA/PitN
DON/Melb
F344/Pit
FHH/Eur
IS/Kyo
LE/Mol
LEW/Pit
LH/Mav
WN/N
WKY/OlaHsd
MNR/N
ODU/N
WF/Pit
MNS/Gib
NP9
OM/Ztm
PVG/Pit
SD/Rij
SHRSP/Riv
GK/KyoSwe
M520/N
ACI/N
BN-Lx/Cub
LN/Mav
NEDH/K
SS/Jr
COP/OlaHsd
FHH.PCK-(D9Rat35-D9Rat70)/Mcwi
GH/Omr
MHS/Gib
MNRA/N
WTC/Kyo
LOU/CHan
MR/Pit
WIST/Nhg
SR/Jr
OKA/Wsl
P5C
SHR/OlaHsd
WAG/RijKyo
|
Annotation
References - curated
| # |
Reference Title |
Reference Citation |
| 1. |
Data downloaded from Wellcome Trust, University of Oxford |
Data downloaded from Wellcome Trust, University of Oxford
|
| 2. |
High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. |
Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
|
| 3. |
Rat Genetic Map Data |
Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
|
| 4. |
Electronic Transfer of SSLP Data |
Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
|
| 5. |
UniSTS Pipeline |
RGD automated pipelines
|
| 6. |
RH Map Project |
RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
|
| 7. |
A high density integrated genetic linkage and radiation hybrid map of the laboratory rat |
Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8
|
Strains and Sequence
Sequence
| |
| Forward Primer |
TCCAAAACCAAGGATTTTGC |
| Reverse Primer |
TGCTCTGTCTGTGCAGGAGT |
| |
| Template |
TCGATCTAGAGGATCCCCACAAGTGTAAGGGTGTGAGCTTGAACCCCAGATCCTACATAGAAAT
TGAAAAGGTAAGGCATGGAGGCCTGTAATTCAGTTTTGGTGCAGATGAAGTAACACGTGTTTCC
CCAGAACTTGCTAACCAGCCAGCCTGGCCTCGGAGAGTCCCAGGTCTGTCTCCAAAACCAAGGA
TTTTGCACTCAGGTGCACACACACACACACACACACACACACACACAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGCATGCACCACTCCTGCACAGACAGA
GCAAATCACTAATCCATTCTCTTAACAGCTACATGTCCTGCATGGTCCATGTCCTACGCAGTGG
GTACCGAGCTCGAATTCGTAATCATGGNCATAGCTGTCTCCTGTGTGAAATTGTTATCCGCTCA
CAATTCCACACAACATNCGAGCCGGANNCATANAGTGTAAAGCCTGGGGTGCCTAATGAGTGNG
CTNACTCACATTTNTTGCGTTGCGCTCACTGCCGCTTTNCGTCGGANNCTGTCGTGCAGCTCNT
TNATGNNCGGCCNC
|
Strain Variation
Strain, Expected Size(s)
Region
QTLs in Region (GRCr8)
| 2303170 | Bp332 | Blood pressure QTL 332 | 3.73 | 0.027 | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 9 | 6714888 | 84474983 | Rat | | 631211 | Bw4 | Body weight QTL4 | 5.31 | | retroperitoneal fat pad mass (VT:0010430) | retroperitoneal fat pad weight to body weight ratio (CMO:0000635) | 9 | 5346479 | 50346479 | Rat | | 2303559 | Gluco54 | Glucose level QTL 54 | 2 | | blood glucose amount (VT:0000188) | blood glucose level (CMO:0000046) | 9 | 8750492 | 53750492 | Rat | | 7207814 | Bmd91 | Bone mineral density QTL 91 | 3.5 | | femur size trait (VT:1000369) | femoral neck cross-sectional area (CMO:0001697) | 9 | 1 | 31250552 | Rat | | 9589055 | Scfw5 | Subcutaneous fat weight QTL 5 | 5.55 | 0.001 | subcutaneous adipose mass (VT:1000472) | abdominal subcutaneous fat pad weight (CMO:0002069) | 9 | 496645 | 45496645 | Rat | | 1641911 | Alcrsp13 | Alcohol response QTL 13 | | | response to alcohol trait (VT:0010489) | brain neurotensin receptor 1 density (CMO:0002068) | 9 | 6214995 | 51214995 | Rat | | 1354650 | Despr5 | Despair related QTL 5 | 4.01 | 0.0017 | locomotor behavior trait (VT:0001392) | amount of time spent in voluntary immobility (CMO:0001043) | 9 | 8750492 | 53750492 | Rat | | 1300124 | Cm4 | Cardiac mass QTL 4 | 3.55 | | heart mass (VT:0007028) | heart weight to body weight ratio (CMO:0000074) | 9 | 1 | 41763315 | Rat | | 61425 | Cia15 | Collagen induced arthritis QTL 15 | 4.6 | | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 9 | 5346479 | 50416711 | Rat | | 631643 | Bp120 | Blood pressure QTL 120 | 3 | 0.004 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 9 | 6714888 | 29567695 | Rat | | 9589158 | Gluco65 | Glucose level QTL 65 | 6.82 | 0.001 | blood glucose amount (VT:0000188) | plasma glucose level (CMO:0000042) | 9 | 496645 | 45496645 | Rat | | 1600365 | Mcs20 | Mammary carcinoma susceptibility QTL 20 | 3 | | mammary gland integrity trait (VT:0010552) | mammary tumor growth rate (CMO:0000344) | 9 | 21031430 | 49025574 | Rat | | 7411592 | Foco8 | Food consumption QTL 8 | 7.4 | 0.001 | eating behavior trait (VT:0001431) | feed conversion ratio (CMO:0001312) | 9 | 496645 | 45496645 | Rat | | 1298088 | Edpm11 | Estrogen-dependent pituitary mass QTL 11 | 2.5 | | pituitary gland mass (VT:0010496) | pituitary gland wet weight (CMO:0000853) | 9 | 6214995 | 51214995 | Rat | |
Additional Information
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