D8Rat54 Marker Search Result - Rat Genome Database

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General

Marker: D8Rat54

Symbol:

D8Rat54

Previously known as:

R0006-B07; oxsts7459; R006-B07;

RGD ID:

35168

Expected Size:

168 (bp)

Position

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_5.0	8	21,850,030 - 21,850,200	NCBI	Rnor5.0
RGSC_v3.4	8	19,796,514 - 19,796,683	RGD	RGSC3.4
RGSC_v3.1	8	19,796,514 - 19,796,683	RGD
RH 3.4 Map	8	181.0	UniSTS
RH 3.4 Map	8	181.0	RGD
SHRSP x BN Map	8	14.26	RGD
SHRSP x BN Map	8	14.26	UniSTS

Is Marker For:

Strains: DA/PitN FHH/Eur F344/Pit GH/Omr GK/KyoSwe DON/Melb M520/N IS/Kyo WN/N LH/Mav LE/Mol LEW/Pit LOU/CHan LN/Mav MHS/Gib MNR/N MNRA/N MNS/Gib MR/Pit NEDH/K NP9 ODU/N OKA/Wsl OM/Ztm P5C PVG/Pit SD/Rij SHR/OlaHsd SR/Jr SHRSP/Riv SS/Jr WAG/RijKyo WF/Pit WIST/Nhg WTC/Kyo AVN/Orl BBDR/Rhw BBDP/Rhw BC/CpbU BDIX/Han BDVII/Cub BN-Lx/Cub BN/SsNHsd BP/Cub BUF/Pit COP/OlaHsd F344.OLETF-(D8Rat58-D8Mgh17)/Tj F344.OLETF-(D8Rat54-D8Mgh17)/Tj F344.Cg-Lepr^fa(D8Rat54-D8Mgh17)/Tj F344.OLETF-(D8Rat54-D8Mgh17)/2Tj

Annotation

References - curated

#	Reference Title	Reference Citation
1.	Data downloaded from Wellcome Trust, University of Oxford	Data downloaded from Wellcome Trust, University of Oxford
2.	High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence.	Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3.	Rat Genetic Map Data	Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4.	Electronic Transfer of SSLP Data	Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5.	UniSTS Pipeline	RGD automated pipelines

Strains and Sequence

Sequence


Forward Primer	CTGCAGCCATCAGCATATGT
Reverse Primer	AACCTGGGCCCTAAGGTAGA

Template	TNTCGACTCTAGAGGATCCCCCTGACATTCTCTTCCGACCTCTGCAGCCATCAGCATATGTGGT GCACAGACATATGTGTAGGCAAAATACACACACACACACACACACACACACACACACACACACA CTACACATACAATTGTTTTTAAGGAAAAAAGTAAAAACAAACAGGAAGAAGAAATGTCTGGTCT ACCTTAGGGCCCAGGTTTTAGTGTAACAAAGGCTTGTCTCCTCCCAGGACTTACCATGTTCCCC TTAGGGGTACCGAGCTCGAATTCGTAATCATGGTCATAGCTGTTTCCTGTGTGAAATTGTTATC CGCTCACAATTCCACACAACATACGAGCCGGAAGCATAAAGTGTAAAGCCTGGGGTGCCTAATG AGTGAGCTAACTCACATTAATTGCGTTGCGCTCACTGCCCGCTTTCCAGTCGGGAAAC

Strain Variation

Strain, Expected Size(s)

AVN/Orl	164
BBDP/Rhw	170
BBDR/Rhw	170
BC/CpbU	170
BDIX/Han	170
BDVII/Cub	170
BN-Lx/Cub	170
BN/SsNHsd	170
BP/Cub	170
BUF/Pit	164
COP/OlaHsd	164
DA/PitN	170

DON/Melb	164
F344/Pit	164
FHH/Eur	170
GH/Omr	170
GK/KyoSwe	144
IS/Kyo	144
LE/Mol	168
LEW/Pit	170
LH/Mav	170
LN/Mav	170
LOU/CHan	144
M520/N	164

MHS/Gib	170
MNR/N	170
MNRA/N	170
MNS/Gib	170
MR/Pit	170
NEDH/K	170
NP9	170
ODU/N	170
OKA/Wsl	164
OM/Ztm	164
P5C	144
PVG/Pit	164

SD/Rij	170
SHR/OlaHsd	164
SHRSP/Riv	164
SR/Jr	170
SS/Jr	170
WAG/RijKyo	170
WF/Pit	170
WIST/Nhg	144
WN/N	170
WTC/Kyo	170

Region

Nucleotide Sequences

Additional Information

External Database Links

Database	Acc Id	Source(s)
UniSTS	119121	UniSTS

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Marker: D8Rat54