D14Rat23 Marker Search Result - Rat Genome Database

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General

Marker: D14Rat23

Symbol:

D14Rat23

Previously known as:

oxsts6204; R003-D08; R0003-D08;

RGD ID:

34981

Expected Size:

168 (bp)

Position

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	1,217,606 - 1,217,776 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	2,227,825 - 2,227,992	NCBI	Rnor6.0
Rnor_5.0	14	2,222,207 - 2,222,374	UniSTS	Rnor5.0
RGSC_v3.4	14	1,764,386 - 1,764,554	RGD	RGSC3.4
RGSC_v3.4	14	1,764,387 - 1,764,554	UniSTS	RGSC3.4
RGSC_v3.1	14	1,764,386 - 1,764,554	RGD
Celera	14	1,256,962 - 1,257,129	UniSTS
RH 2.0 Map	14	0.0	RGD
FHH x ACI Map	14	1.33	RGD

Is Marker For:

Strains: AVN/Orl BBDP/Rhw BBDR/Rhw BC/CpbU BDIX/Han BDVII/Cub BN/SsNHsd BP/Cub BUF/Pit DA/PitN DON/Melb F344/Pit FHH/Eur IS/Kyo LE/Mol LEW/Pit LH/Mav MHS/Gib MNRA/N WN/N WKY/OlaHsd WTC/Kyo LOU/CHan MNR/N MR/Pit ODU/N WF/Pit WIST/Nhg SR/Jr MNS/Gib NP9 OKA/Wsl OM/Ztm P5C PVG/Pit SD/Rij SHR/OlaHsd SHRSP/Riv WAG/RijKyo GK/KyoSwe M520/N ACI/N BN-Lx/Cub LN/Mav F344.OLETF-(D14Rat23-D14Rat12)/Tj GH/Omr NEDH/K SS/Jr COP/OlaHsd F344.ZUC-Lepr^fa(D14Rat23-D14Rat12)/Tj F344.OLETF-(D14Rat23-D14Rat55)/Tj F344.OLETF-(D14Rat23-D14Rat5)/Tj F344.OLETF-(D14Rat23-D14Rat10)/Tj F344.OLETF-(D14Rat23-D14Wox14)/Tj F344.OLETF-(D14Rat23)/Tj F344.ZUC-(Lepr^fa),OLETF-(D14Rat23-D14Rat12)/Tj
QTLs: Niddm20 Niddm15

Annotation

References - curated

#	Reference Title	Reference Citation
1.	Data downloaded from Wellcome Trust, University of Oxford	Data downloaded from Wellcome Trust, University of Oxford
2.	Rat Genetic Map Data	Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3.	Electronic Transfer of SSLP Data	Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4.	UniSTS Pipeline	RGD automated pipelines
5.	RH Map Project	RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
6.	A high density integrated genetic linkage and radiation hybrid map of the laboratory rat	Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8

Strains and Sequence

Sequence


Forward Primer	TCGGAGGGAGTGACACATAA
Reverse Primer	TGTCCCTCAGTTCAGAATACCC

Template	CAAGCTTGCATGCCTGCAGGTCGACTCTAGAGGATCCCCACTGAGCAGTGGGATCAGGAATTGA TATACGTAAGTGGTATGGTGGCTGTCGGAGGGAGTGACACATAAGTCAAGAAGATAGGTGGCAG GAGCCATGTGGTCATATTCTCTCCCTCCTTCCCGACACCCGTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGGTGTGTGTGTGGGTATTCTGAACTGAGGGACA GGTGGGTACCGAGCTCGAATTCGTAATCATGGTCATAGCTGTTTCCTGTGTGAAATTGTTATCC GCTCACAATTCCACACAACATACGAGCCGGAAGCATAAAGTGTAAAGCCTGGGGTGCCTAATGA GTGAGCTAACTCACATTAATTGCGTTGCGCTCACTGCCCGCTTTCCAGTCGGGAAACCTGTCGT GCCAGCTGCATTAATGAATCGGCCAACGCGCGGGGAGAGGCGGTTTGCGTATTGGGCGCCC

Strain Variation

Strain, Expected Size(s)

ACI/N	168
AVN/Orl	168
BBDP/Rhw	168
BBDR/Rhw	168
BC/CpbU	168
BDIX/Han	168
BDVII/Cub	168
BN-Lx/Cub	168
BN/SsNHsd	168
BP/Cub	168
BUF/Pit	168
COP/OlaHsd	156
DA/PitN	168

DON/Melb	156
F344/Pit	156
FHH/Eur	166
GH/Omr	158
GK/KyoSwe	168
IS/Kyo	168
LE/Mol	168
LEW/Pit	168
LH/Mav	168
LN/Mav	168
LOU/CHan	168
M520/N	168
MHS/Gib	168

MNR/N	168
MNRA/N	168
MNS/Gib	168
MR/Pit	168
NEDH/K	158
NP9	168
ODU/N	156
OKA/Wsl	168
OM/Ztm	168
P5C	168
PVG/Pit	168
SD/Rij	166
SHR/OlaHsd	168

SHRSP/Riv	168
SR/Jr	168
SS/Jr	168
WAG/RijKyo	168
WF/Pit	168
WIST/Nhg	168
WKY/OlaHsd	168
WN/N	156
WTC/Kyo	166

Region

Nucleotide Sequences


GenBank Nucleotide	AC099280	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2300159	Bmd61	Bone mineral density QTL 61	5.3	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	14	1	26541967	Rat
2300183	Bmd60	Bone mineral density QTL 60	5.7	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	14	1	26541967	Rat
619619	Rf4	Renal disease susceptibility QTL 4	4.1	0.002	urine total protein amount (VT:0000032)	urine protein excretion rate to body weight ratio (CMO:0001099)	14	1	32754612	Rat
634352	Apr6	Acute phase response QTL 6	3.7		blood interleukin-6 amount (VT:0008595)	plasma interleukin-6 level (CMO:0001927)	14	1	41131407	Rat
71115	Niddm15	Non-insulin dependent diabetes mellitus QTL 15	4.8		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	14	1217606	11030812	Rat
70204	Niddm20	Non-insulin dependent diabetes mellitus QTL 20	5.1	0.000008	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	14	1217606	16960180	Rat

Additional Information

External Database Links

Database	Acc Id	Source(s)
NCBI Gene	326530	UniSTS
	326563	UniSTS
UniSTS	118364	UniSTS

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Marker: D14Rat23