D1Rat78 Marker Search Result - Rat Genome Database

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Marker: D1Rat78

Symbol: D1Rat78
Previously known as: oxsts6741; R010-A01; R0010-A01; 
RGD ID: 34969
Expected Size: 168 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21240,781,320 - 240,781,488 (+)MAPPERmRatBN7.2
Rnor_6.01261,215,686 - 261,215,853NCBIRnor6.0
Rnor_5.01268,668,158 - 268,668,325UniSTSRnor5.0
Celera1236,616,289 - 236,616,456UniSTS
RH 3.4 Map11621.31RGD
RH 3.4 Map11621.31UniSTS
SHRSP x BN Map1133.51RGD
SHRSP x BN Map1133.51UniSTS
Is Marker For: Strains:   ACI/N   AVN/Orl   BBDR/Rhw   BBDP/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BN-Lx/Cub   BN/SsNHsd   BP/Cub   BUF/Pit   COP/OlaHsd   DA/PitN   FHH/Eur   F344/Pit   GH/Omr   GK/KyoSwe   DON/Melb   M520/N   IS/Kyo   WN/N   LH/Mav   LE/Mol   LEW/Pit   LOU/CHan   LN/Mav   MHS/Gib   MNR/N   MNRA/N   MNS/Gib   MR/Pit   NEDH/K   NP9   ODU/N   OKA/Wsl   OM/Ztm   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   SR/Jr   SHRSP/Riv   SS/Jr   WAG/RijKyo   WF/Pit   WIST/Nhg   WKY/OlaHsd   WTC/Kyo  
Genes:   Mms19  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer GAACACAGGGAATTAGACACGTT
Reverse Primer TAGGGGCAAAGCATCCATAC
 
Template 
GTGCAAGCTTGCATGCCTGCAGGTCGACTCTAGAGGATCCCCACACATACATAGGGGCAAAGCA
TCCATACACATAAGTCTTCGATCTGTATATTTATATACAATCTGTATTAAATATATACAATTAC
ATATTTATACTGACATACACACACACACACACACACACACACACATACACACATCTGACATATC
AGAGCTCACTAACGTGTCTAATTCCCTGTGTTCTTTCCCACAGTCACCATTTGAACATCTTTAT
TACCCCAGAGTGAACTCCTGCTCTTCAGCACCCATTCCCTTAACCCCTCTTCTTCCCAGGCCCT
GGCAAATCCATGGATTAACCTACTATGGCAAATAGCAGAGATGTAGAGCCCCAGCTGTGTGACC
TTTGTGTCTGGTTCCTCTCACTGAGTGTGTACCCTTCTGGCACTTGGGAACCACAGNAATTCAG
GAAAGTCTTGGGTCCCGTCAAAG

Region

Nucleotide Sequences
GenBank Nucleotide CH473986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
NCBI Gene 171124 UniSTS