D20Yum19 Marker Search Result - Rat Genome Database

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Marker: D20Yum19

Symbol: D20Yum19
Previously known as: NoName; 
RGD ID: 2303259
Expected Size: 0 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2202,323,956 - 2,324,175 (+)MAPPERmRatBN7.2
mRatBN7.2202,259,000 - 2,259,219 (+)MAPPERmRatBN7.2
mRatBN7.2202,288,469 - 2,288,688 (+)MAPPERmRatBN7.2
mRatBN7.2202,223,185 - 2,223,404 (+)MAPPERmRatBN7.2
mRatBN7.2202,102,699 - 2,102,918 (+)MAPPERmRatBN7.2
mRatBN7.2202,420,617 - 2,420,836 (+)MAPPERmRatBN7.2
Rnor_6.0202,593,602 - 2,593,820NCBIRnor6.0
Rnor_5.0204,695,526 - 4,695,744UniSTSRnor5.0
Cytogenetic Map20p12UniSTS
Is Marker For: Genes:   2609a1a2   Rcrg1-ps12  


Annotation


References - curated
# Reference Title Reference Citation
1. UniSTS Pipeline RGD automated pipelines
2. An informative set of SSLP markers and genomic profiles in the rat MHC, the RT1 complex. Takagi Y, etal., Immunogenetics. 2008 Dec 24.

Strains and Sequence

Sequence
 
Forward Primer CTGGCTAGCTGCTTCTTTGG
Reverse Primer AGCGCAGCAGATTTACCATC
 

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
15970552759a12759a1 pseudogene2021066672106903Rat
15957582906a1class I gene fragment 29062021066692106905Rat
15957572920a1a2class I gene fragment 29202021199882120776Rat
15957562927a1class I gene fragment 29272021277762128044Rat
1595740Nerg-ps14EST221625 related pseudogene 142021311292131647Rat
1595755Nerg-ps13EST221625 related pseudogene 132021311312131649Rat
1595741Rcrg1-ps39Riken clone 5830469G19 related pseudogene 392021344712134778Rat
15957422984a1a2class I gene fragment 29842021374192137896Rat
1595743Rcrg1-ps38Riken clone 5830469G19 related pseudogene 382021379252138215Rat
15957442981a1a2class I gene fragment 29812021408552141332Rat
1595745Rcrg1-ps37Riken clone 5830469G19 related pseudogene 372021413612141652Rat
15957472959a1class I gene fragment 29592021627002162936Rat
15970562747a1a22747a1a2 pseudogene2021685922169375Rat
15944462661a1a2class I gene fragment 26612021690302169377Rat
15957492950a1class I gene fragment 29502021723322172568Rat
15957762824a1class I gene fragment 28242021723342172570Rat
1595759Rcrg1-ps33Riken clone 5830469G19 related pseudogene 332021767702177060Rat
15957602901a1a2class I gene fragment 29012021770882177566Rat
1595761Rcrg1-ps32Riken clone 5830469G19 related pseudogene 322021802042180627Rat
15944372690a1-a1a2class I gene fragment 26902021923542193135Rat
15957632879a1class I gene fragment 28792021998202200088Rat
1594433Nerg-ps9EST221625 related pseudogene 92022037872204305Rat
1595765Rcrg1-ps31Riken clone 5830469G19 related pseudogene 312022071312207439Rat
15957662869a1a2class I gene fragment 28692022187082219184Rat
1595767Rcrg1-ps30Riken clone 5830469G19 related pseudogene 302022192132219504Rat
15957682865a2class I gene fragment 28652022221552222352Rat
1595769Rcrg1-ps29Riken clone 5830469G19 related pseudogene 292022226612222951Rat
15957702860a1class I gene fragment 28602022271442227380Rat
15957712846a1a2class I gene fragment 28462022404472241229Rat
1595772Nerg-ps11EST221625 related pseudogene 112022516962252212Rat
1595773Rcrg1-ps28Riken clone 5830469G19 related pseudogene 282022550252255255Rat
15957742829a1a2class I gene fragment 28292022579702258447Rat
1595775Rcrg1-ps27Riken clone 5830469G19 related pseudogene 272022584762258767Rat
15957772812a1a2class I gene fragment 28122022752252276024Rat
1595778Rcrg1-ps26Riken clone 5830469G19 related pseudogene 262022844932284801Rat
15957792800a1a2class I gene fragment 28002022874392287916Rat
1595780Rcrg1-ps25Riken clone 5830469G19 related pseudogene 252022879452288236Rat
15957812795a1class I gene fragment 27952022924902292729Rat
15957822788a1a2class I gene fragment 2788a1a22022983962299178Rat
15970482781a1class I gene fragment 27812023058812306148Rat
1597049Nerg-ps10EST221625 related pseudogene 102023092612309779Rat
15970512768a1a22768a1a2 pseudogene2023194802319957Rat
1597052Rcrg1-ps23Riken clone 5830469G19 related pseudogene 232023199862320276Rat
15970532764a12764a1 pseudogene2023229262323123Rat
1597054Rcrg1-ps22Riken clone 5830469G19 related pseudogene 222023234322323722Rat
15944312722a1a2class I gene fragment 27222023412322342016Rat
15944322715a1class I gene fragment 27152023487462349014Rat
1595764Nerg-ps12EST221625 related pseudogene 122023528062353324Rat
1594434Rcrg1-ps19Riken clone 5830469G19 related pseudogene 192023561362356444Rat
15944352705a1class I gene fragment 27052023590822359279Rat
15944362702a1class I gene fragment 27022023612522361491Rat
15944502641a1class I gene fragment 26412023788422379078Rat
1597058Rcrg1-ps21Riken clone 5830469G19 related pseudogene 212023832692383559Rat
1594449Rcrg1-ps14Riken clone 5830469G19 related pseudogene 142023832702383560Rat
15944482646a1a2class I gene fragment 26462023835882384066Rat
1597060Rcrg1-ps20Riken clone 5830469G19 related pseudogene 202023868072387126Rat
1594447Rcrg1-ps15Riken clone 5830469G19 related pseudogene 152023868092387128Rat
15957622886a1-a1a2class I gene fragment 28862023988522399634Rat
15944382683a1class I gene fragment 26832024063242406592Rat
1594439Nerg-ps8EST221625 related pseudogene 82024098712410388Rat
1594440Rcrg1-ps18Riken clone 5830469G19 related pseudogene 182024131962413504Rat
15944412673a1a2class I gene fragment 26732024161452416621Rat
1594442Rcrg1-ps17Riken clone 5830469G19 related pseudogene 172024166502416940Rat
15944432669a1class I gene fragment 26692024195872419784Rat
1594444Rcrg1-ps16Riken clone 5830469G19 related pseudogene 162024200932420383Rat



QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2306850Pia40Pristane induced arthritis QTL 400.0001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)2015279595304575Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20153065546530655Rat
7387283Uae44Urinary albumin excretion QTL 440.1712urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)20126123605Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600972Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20152784246527842Rat
1354642Despr15Despair related QTL 150.0027locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)20124159021Rat
1600382Edcs3Endometrial carcinoma susceptibility QTL33.50.003uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)20125159026Rat
8694189Bw153Body weight QTL 1533.130.001body mass (VT:0001259)body weight gain (CMO:0000420)20129191651Rat
724519Bp144Blood pressure QTL 1440.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2013624629Rat
9590109Sffal8Serum free fatty acids level QTL 85.320.01blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)20129191651Rat
9590275Scort15Serum corticosterone level QTL 153.480.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20129191651Rat
9589155Insul32Insulin level QTL 326.380.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20129191651Rat
7411650Foco23Food consumption QTL 2320.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20129191651Rat
2317851Alcrsp22Alcohol response QTL 223.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127339237Rat
1641893Alcrsp7Alcohol response QTL 7response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127339237Rat
6893685Bw111Body weight QTL 1112.70.004body mass (VT:0001259)body weight (CMO:0000012)20132578807Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20136600972Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene 415023 UniSTS
  415024 UniSTS