D18Chm14 Marker Search Result - Rat Genome Database

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Marker: D18Chm14

Symbol: D18Chm14
Previously known as:
RGD ID: 1579017
Expected Size: 219 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2186,135,447 - 6,135,669 (+)MAPPERmRatBN7.2
Rnor_6.0186,387,873 - 6,388,091NCBIRnor6.0
Rnor_5.0186,349,667 - 6,349,885UniSTSRnor5.0
RGSC_v3.4186,238,102 - 6,238,320UniSTSRGSC3.4
Celera186,164,608 - 6,164,826UniSTS
Cytogenetic Map18p13UniSTS
Is Marker For: Genes:   Kctd1  


Annotation


References - curated
# Reference Title Reference Citation
1. A loss of genome buffering capacity of Dahl salt-sensitive model to modulate blood pressure as a cause of hypertension. Charron S, etal., Hum Mol Genet. 2005 Dec 15;14(24):3877-84. Epub 2005 Nov 8.
2. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer ATGCCTGAAACTCCAGGATG
Reverse Primer GCACAGGGACATCCATTTCT
 
Template
GATATGCATTTAATTTTTTGAAATTTATAATAACGTTTTGAGATAGGAAAATGGAGACCCCATT
TTATAAGGGAGCTTCCCTTAGACCTGTAGACAAGCACATGAAAAAACAAGTAAACATGGATGGA
CTCCAAAAGGCAGATAAACCAGGATCTCAAAGTGTATTTTGTGGACTGGAGAGATGGCTCAGTG
GTTAAGAGCACTGACTGCTCTTCAAGGAAACTCATCAGTTCCTGGCACCCACGTGGGTGGTTCA
CAATGCCTGAAACTCCAGGATGGACATGCACCTTGTCACCTCCATGGATCACACACACACACAC
ACACACACACACACACACACACACACACACACACACACACACACACGGGGTGGGGGGGGGCTAC
AGGAGATGACTACAAATCTGGTGGCTTAAATCAACACAGGCTCATTCTGTTACTGTTTGGGAGG
TCAGAAGTCAGAAATGGATGTCCCTGTGCTGAAACTAAGGAGTCATCAGGACCCCTCTCCTGCA
GATGCTAGGGGACGGCTCTCTCCTGGCCGCCAGCTGCCACTGTACTTTGTTCACTCACACTCTA
CCTTTGAGCTCCTTGCCACTCTTATAAGGGCCCTTGTGATAGCCTAGTGCCCACCTGGGTTTTC
ATCTAAAACTTGTAACCTCTGCCAAGTCCTGCCTGCCACACGTGGTCCCTGGGCACTGGC

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
621566Kctd1potassium channel tetramerization domain containing 11861223906316434Rat

Nucleotide Sequences
GenBank Nucleotide CH474065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000248 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
8552968Pigfal19Plasma insulin-like growth factor 1 level QTL 1911.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)18125758124Rat
9590248Scort10Serum corticosterone level QTL 1019.710.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)18125758124Rat
2312598Bp340Blood pressure QTL 3400.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)18130558703Rat
2300180Bmd67Bone mineral density QTL 674.80.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)18134291613Rat
2293661Bss50Bone structure and strength QTL 504.640.0003lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)18134291613Rat
61388Bp2Blood pressure QTL 23.23arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)18135374722Rat
9589153Insul31Insulin level QTL 317.150.05blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)18142547119Rat
1641910Colcr3Colorectal carcinoma resistance QTL 35.020.000007intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor surface area measurement (CMO:0002078)18224947722066430Rat
1641910Colcr3Colorectal carcinoma resistance QTL 35.020.000007intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)18224947722066430Rat
2299160Iddm35Insulin dependent diabetes mellitus QTL 352.79blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)18420794160377792Rat
2312568Glom21Glomerulus QTL 2120.005kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)18518585840503530Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene 291772 UniSTS
UniSTS 518136 UniSTS