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Human Genome Information - Human Genome Assembly GRCh38


Human genome projects have generated an unprecedented amount of knowledge about human genetics and health.Study of the human condition is supported by a wealth of genome-scale data that will result in significant medical advances derived from a better understanding human biology.

Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates[28]; Haplorrhini; Catarrhini; Hominidae; Homo; Homo sapiens.


Summary

AssemblyHuman Genome Assembly GRCh38
GCF_000001405.37
Base Pairs3,554,996,726
Total Sequence Length (bp)3,209,286,105
Total Assembly Gap Length (bp)159,970,007
Gaps Between Scaffolds (bp)349
Number of Scaffolds735
Scaffold N50 (bp)67,794,873
Scaffold L5016
Number of Contigs1,385
Contig N50 (bp)56,413,054
Contig L5019
No. of NCBI chromosome records25

Gene Counts

Total Genes40854
Protein Coding genes19362
Non coding RNA6390
tRNA458
SnRNA63
rRNA31
Pseudogenes13647
miRNA Targets Confirmed1740
miRNA Targets Predicted36220
Gene transcripts159043
Genes without orthologs20354
Genes with Orthologs20500

#Human Genes with Orthologs in...

Mouse19219
Rat17946
Chinchilla16204
Bonobo17659
Dog17649
Squirrel16446
Pig17571

Other

Exons472657
Karyotype
 
Chromosomes
,
ChromosomeSequence LengthGap LengthGap CountContig CountRefSeq Id
1 248956422 18475301 77 12 NC_000001.11
2 242193529 1645288 22 7 NC_000002.12
3 198295559 195415 21 6 NC_000003.12
4 190214555 461888 18 9 NC_000004.12
5 181538259 272881 38 17 NC_000005.10
6 170805979 727455 16 3 NC_000006.12
7 159345973 375838 17 6 NC_000007.14
8 145138636 370500 14 6 NC_000008.11
9 138394717 16604164 44 21 NC_000009.12
10 133797422 534416 37 6 NC_000010.11
11 135086622 552880 19 6 NC_000011.10
12 133275309 137488 25 9 NC_000012.12
13 114364328 16381200 22 18 NC_000013.11
14 107043718 16475569 27 17 NC_000014.9
15 101991189 17349861 18 7 NC_000015.10
16 90338345 8532401 23 9 NC_000016.10
17 83257441 337225 37 10 NC_000017.11
18 80373285 283635 37 12 NC_000018.10
19 58617616 176858 10 7 NC_000019.10
20 64444167 499899 82 18 NC_000020.11
21 46709983 6621360 49 40 NC_000021.9
22 50818468 11658686 45 36 NC_000022.11
X 156040895 1147861 29 9 NC_000023.11
Y 57227415 30812367 56 13 NC_000024.10
MT 16569 - - 1 NC_012920.1
References

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.