Snrpd3l1 (small nuclear ribonucleoprotein D3 polypeptide like 1) - Rat Genome Database

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Gene: Snrpd3l1 (small nuclear ribonucleoprotein D3 polypeptide like 1) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Snrpd3l1 (Ensembl: AABR07042875.1)
Name: small nuclear ribonucleoprotein D3 polypeptide like 1
RGD ID: 9444094
Description: Predicted to enable RNA binding activity. Predicted to be involved in spliceosomal snRNP assembly. Predicted to be located in cytosol. Predicted to be part of SMN-Sm protein complex; spliceosomal complex; and spliceosomal snRNP complex.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC103694291; LOC502191; RGD1560685; similar to small nuclear ribonucleoprotein D3; small nuclear ribonucleoprotein Sm D3 pseudogene; small nuclear ribonucleoprotein Sm D3-like
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81912,401,818 - 12,402,246 (+)NCBIGRCr8
mRatBN7.21912,396,026 - 12,396,454 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1912,396,026 - 12,396,454 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01913,287,438 - 13,287,866 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01924,400,007 - 24,400,435 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41912,848,260 - 12,848,688 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1912,269,361 - 12,269,789 (+)NCBICelera
Cytogenetic Map19p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function
RNA binding  (IBA)

References

References - curated
# Reference Title Reference Citation
1. GOA pipeline RGD automated data pipeline
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Snrpd3l1
1 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1549847Bss8Bone structure and strength QTL 84lumbar vertebra strength trait (VT:0010574)vertebra ultimate force (CMO:0001678)19131963836Rat
8552935Pigfal10Plasma insulin-like growth factor 1 level QTL 105.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)19136824771Rat
61447Tcas1Tongue tumor susceptibility QTL 16.08tongue integrity trait (VT:0010553)squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)19231612147316121Rat
631681Cm12Cardiac mass QTL 123.330.00053heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)19128982497Rat
9590298Uminl5Urine mineral level QTL 53.590.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)19136824771Rat
631840Niddm38Non-insulin dependent diabetes mellitus QTL 383.86blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)191032318023069265Rat
10054132Srcrt9Stress Responsive Cort QTL 92.870.0017blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)19127355345Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19409615555283277Rat
724518Uae19Urinary albumin excretion QTL 195.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19745724942983518Rat
8694186Bw152Body weight QTL 1523.340.001body mass (VT:0001259)body weight gain (CMO:0000420)1956937445569374Rat
61423Cia14Collagen induced arthritis QTL 143joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)191082797043544039Rat
7411590Foco7Food consumption QTL 76.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)19124688055Rat
631678Cm9Cardiac mass QTL 94.270.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)19128982497Rat
9590250Scort11Serum corticosterone level QTL 1123.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)19136824771Rat
9590090Insglur8Insulin/glucose ratio QTL 810.810.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)19136824771Rat
2317848Alcrsp21Alcohol response QTL 211.8999999761581420.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)19320477748204777Rat
9589102Slep13Serum leptin concentration QTL 134.630.001blood leptin amount (VT:0005667)plasma leptin level (CMO:0000781)1956937445569374Rat
7247442Uae39Urinary albumin excretion QTL 39urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19218792746708701Rat
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19218792756457239Rat
724565Tcas5Tongue tumor susceptibility QTL 510.04tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)19997775339654489Rat


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_039098325 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_039098325   ⟹   XP_038954253
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81912,401,818 - 12,402,246 (+)NCBI
mRatBN7.21912,396,026 - 12,396,454 (+)NCBI
Protein Sequences
Protein RefSeqs XP_038954253 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000085452.1
RefSeq Acc Id: XP_038954253   ⟸   XM_039098325
- UniProtKB: A0A8I6A3D9 (UniProtKB/TrEMBL)
Protein Domains
Sm

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-6448 BioCyc
Ensembl Genes ENSRNOG00000013839 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000018492.5 UniProtKB/TrEMBL
Gene3D-CATH 2.30.30.100 UniProtKB/TrEMBL
InterPro LSm4/Sm_D1/D3 UniProtKB/TrEMBL
  LSM_dom_euk/arc UniProtKB/TrEMBL
  LSM_dom_sf UniProtKB/TrEMBL
  SmD3 UniProtKB/TrEMBL
NCBI Gene LOC103694291 ENTREZGENE
PANTHER PTHR23338 UniProtKB/TrEMBL
Pfam LSM UniProtKB/TrEMBL
PhenoGen Snrpd3l1 PhenoGen
RatGTEx ENSRNOG00000013839 RatGTEx
Superfamily-SCOP SSF50182 UniProtKB/TrEMBL
UniProt A0A8I6A3D9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Snrpd3l1  small nuclear ribonucleoprotein D3 polypeptide like 1  LOC103694291  small nuclear ribonucleoprotein Sm D3 pseudogene  Symbol and Name Changed 1299863 APPROVED
2015-07-29 LOC103694291  small nuclear ribonucleoprotein Sm D3 pseudogene  RGD1560685  similar to small nuclear ribonucleoprotein D3  Data merged from RGD:1560685 737654 PROVISIONAL
2014-08-25 LOC103694291  small nuclear ribonucleoprotein Sm D3 pseudogene      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-04-30 RGD1560685  similar to small nuclear ribonucleoprotein D3   RGD1560685_predicted  similar to small nuclear ribonucleoprotein D3 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1560685_predicted  similar to small nuclear ribonucleoprotein D3 (predicted)  LOC502191  similar to small nuclear ribonucleoprotein D3  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC502191  similar to small nuclear ribonucleoprotein D3      Symbol and Name status set to provisional 70820 PROVISIONAL