Zeb2-as1 (ZEB2 antisense RNA 1) - Rat Genome Database

Name: Zeb2-as1
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Zeb2-as1 (ZEB2 antisense RNA 1) Rattus norvegicus

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Symbol:

Zeb2-as1

Name:

ZEB2 antisense RNA 1

RGD ID:

9273023

Description:

Orthologous to human ZEB2-AS1 (ZEB2 antisense RNA 1); INTERACTS WITH 17beta-estradiol; 17beta-estradiol 3-benzoate; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

ncrna

RefSeq Status:

VALIDATED

Previously known as:

LOC103691779; uncharacterized LOC103691779; Zeb2os; zinc finger E-box binding homeobox 2, opposite strand

RGD Orthologs

Human

Mouse

Alliance Orthologs

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	49,752,502 - 49,755,379 (+)	NCBI		GRCr8
mRatBN7.2	3	29,343,078 - 29,345,943 (+)	NCBI	mRatBN7.2	mRatBN7.2
UTH_Rnor_SHR_Utx	3	32,736,269 - 32,739,157 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	41,321,315 - 41,324,197 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	39,140,022 - 39,142,911 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	29,994,753 - 29,997,626 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Celera	3	27,648,976 - 27,651,786 (+)	NCBI		Celera
Cytogenetic Map	3	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

congestive heart failure (ISO)

Mowat-Wilson syndrome (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17beta-estradiol (EXP)

17beta-estradiol 3-benzoate (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

bis(2-ethylhexyl) phthalate (EXP)

lipopolysaccharide (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

silver atom (ISO)

silver(0) (ISO)

testosterone (EXP)

titanium dioxide (ISO)

tremolite asbestos (ISO)

triptonide (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations

Additional References at PubMed

PMID:8889548

Genomics

Comparative Map Data

Zeb2-as1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	49,752,502 - 49,755,379 (+)	NCBI		GRCr8
mRatBN7.2	3	29,343,078 - 29,345,943 (+)	NCBI	mRatBN7.2	mRatBN7.2
UTH_Rnor_SHR_Utx	3	32,736,269 - 32,739,157 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	41,321,315 - 41,324,197 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	39,140,022 - 39,142,911 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	29,994,753 - 29,997,626 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Celera	3	27,648,976 - 27,651,786 (+)	NCBI		Celera
Cytogenetic Map	3	q12	NCBI

ZEB2-AS1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	144,519,614 - 144,520,899 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	144,517,978 - 144,521,477 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	145,277,181 - 145,278,466 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Cytogenetic Map	2	q22.3	NCBI
HuRef	2	137,269,510 - 137,270,795 (+)	NCBI		HuRef
CHM1_1	2	145,282,271 - 145,283,544 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	2	144,967,621 - 144,968,908 (+)	NCBI		T2T-CHM13v2.0

Zeb2os
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	45,001,150 - 45,004,099 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	45,000,501 - 45,004,099 (+)	Ensembl		GRCm39 Ensembl
GRCm38	2	45,111,138 - 45,114,087 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	45,110,707 - 45,114,087 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	44,966,658 - 44,969,607 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	45,118,455 - 45,121,392 (+)	NCBI		MGSCv36	mm8
Celera	2	46,823,642 - 46,826,761 (+)	NCBI		Celera
Cytogenetic Map	2	B	NCBI
cM Map	2	27.31	NCBI

Variants

Variants in Zeb2-as1
54 total Variants

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
6893355	Bw101	Body weight QTL 101	0.4	0.38	body mass (VT:0001259)	body weight (CMO:0000012)	3	10778704	30357018	Rat
2302055	Pia30	Pristane induced arthritis QTL 30	3.5	0.001	blood autoantibody amount (VT:0003725)	serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)	3	27936919	72936919	Rat
1298073	Cm13	Cardiac mass QTL 13	2.5		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	25013911	38192233	Rat
2303593	Gluco46	Glucose level QTL 46	3		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	28468571	73468571	Rat
1354590	Despr11	Despair related QTL 11		0.000031	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	3	28468571	73468571	Rat
634306	Bp140	Blood pressure QTL 140	3.3	0.0013	arterial blood pressure trait (VT:2000000)	body weight (CMO:0000012)	3	17374703	35528639	Rat
10401810	Kidm53	Kidney mass QTL 53			kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	8227194	47233430	Rat
2298542	Neuinf11	Neuroinflammation QTL 11	3.9		nervous system integrity trait (VT:0010566)	spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)	3	15005422	76927699	Rat
1298526	Arunc3	Aerobic running capacity QTL 3	2.2		exercise endurance trait (VT:0002332)	maximum distance run on treadmill (CMO:0001406)	3	8227194	33703538	Rat
631832	Sach1	Saccharin preference QTL 1	2.7	0.02	consumption behavior trait (VT:0002069)	calculated saccharin drink intake volume (CMO:0001600)	3	27494621	44188411	Rat
2313079	Bss73	Bone structure and strength QTL 73	1.5		tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	3	27494621	50302886	Rat
1558657	Cm43	Cardiac mass QTL 43	6.6	3e-08	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	10778823	30356773	Rat
2313076	Bss74	Bone structure and strength QTL 74	2	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	3	27494621	50302886	Rat
631568	Bp92	Blood pressure QTL 92	2.2	0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	1	39874793	Rat
6893363	Bw105	Body weight QTL 105	2.6	0.0036	body mass (VT:0001259)	body weight (CMO:0000012)	3	10778704	30357018	Rat
61468	Bp15	Blood pressure QTL 15	4.4		blood pressure trait (VT:0000183)	pulse pressure (CMO:0000292)	3	1	33278763	Rat
9590286	Uminl1	Urine mineral level QTL 1	3.5	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	3	28249687	73249687	Rat
631831	Alc8	Alcohol consumption QTL 8	2.7		consumption behavior trait (VT:0002069)	calculated ethanol drink intake rate (CMO:0001615)	3	1	33230976	Rat
1558647	Cm46	Cardiac mass QTL 46	5.4	0.0000055	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	10778823	30356773	Rat
4889966	Bss95	Bone structure and strength QTL 95	4.4		tibia area (VT:1000281)	tibia-fibula cross-sectional area (CMO:0001718)	3	1	36847613	Rat
2313093	Bmd77	Bone mineral density QTL 77	2.2	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	3	27494621	50302886	Rat
12879852	Cm93	Cardiac mass QTL 93		0.001	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	3	18311454	47233430	Rat
1558654	Bw56	Body weight QTL 56	4.5	0.0000171	body mass (VT:0001259)	body weight (CMO:0000012)	3	10778704	30357018	Rat
12879853	Am5	Aortic mass QTL 5		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	3	18311454	47233430	Rat
9590136	Scort3	Serum corticosterone level QTL 3	23.37	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	28249687	73249687	Rat
12879854	Kidm63	Kidney mass QTL 63		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	18311454	47233430	Rat
10450804	Scl70	Serum cholesterol level QTL 70	4.7	0.001	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	3	20714090	65714090	Rat
1558650	Cm48	Cardiac mass QTL 48	4	0.0001	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	3	10778823	30356773	Rat
1358905	Hrtrt17	Heart rate QTL 17	5.9	0.000014	heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	3	10861912	89878372	Rat
12879849	Bw180	Body weight QTL 180		0.037	body mass (VT:0001259)	body weight (CMO:0000012)	3	18311454	47233430	Rat
70191	BpQTLcluster4	Blood pressure QTL cluster 4	3		arterial blood pressure trait (VT:2000000)	absolute change in systolic blood pressure (CMO:0000607)	3	10778704	50302886	Rat
2313101	Bmd76	Bone mineral density QTL 76	3.6	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	3	27494621	50302886	Rat
12879850	Cm91	Cardiac mass QTL 91		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	3	18311454	47233430	Rat
731172	Bp151	Blood pressure QTL 151		0.04	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	18311454	47233430	Rat
12879851	Cm92	Cardiac mass QTL 92		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	18311454	47233430	Rat
631545	Bp85	Blood pressure QTL 85	3.1		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	1	33278763	Rat
8694196	Abfw2	Abdominal fat weight QTL 2	16.58	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	3	28249687	73249687	Rat
1358885	Bp251	Blood pressure QTL 251	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	14489145	121056321	Rat
8552950	Pigfal12	Plasma insulin-like growth factor 1 level QTL 12	7.3		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	3	28249687	73249687	Rat
631676	Cm8	Cardiac mass QTL 8	7.03	0.0001	aorta mass (VT:0002845)	aorta weight (CMO:0000076)	3	16954708	61954708	Rat
10450794	Scl69	Serum cholesterol level QTL 69	6.3	0.001	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	3	20714090	65714090	Rat
631679	Cm10	Cardiac mass QTL 10	7.34	0.0001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	1	31158234	Rat
2290452	Scl56	Serum cholesterol level QTL 56	2.26		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	3	1	91609953	Rat
8694386	Bw159	Body weight QTL 159	4.52	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	3	28249687	73249687	Rat
2313049	Bss72	Bone structure and strength QTL 72	2.6	0.0001	tibia area (VT:1000281)	tibia midshaft cross-sectional area (CMO:0001717)	3	27494621	50302886	Rat
2312664	Scl62	Serum cholesterol level QTL 62		0.05	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	3	1	38710544	Rat
1358888	Bp264	Blood pressure QTL 264	4.43		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	14489145	121056321	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	NR_132636	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AI501066	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BF547452	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CA507562	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

NR_132636

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	49,752,502 - 49,755,379 (+)	NCBI
mRatBN7.2	3	29,343,078 - 29,345,943 (+)	NCBI
Rnor_6.0	3	29,994,753 - 29,997,626 (+)	NCBI
Celera	3	27,648,976 - 27,651,786 (+)	NCBI

Sequence:

show sequence

GCTGTGCCTCGAGGATTAGTTTAAACAGCGGGCTATAAAAGATGTAACAGATGCAAACTGTAAC
ACAAGGGCCATTAACCCTTTCTCTGCCGCCCAGCACGCCCAGTCCCTACACCCTGCACCTATTG
TCTCCGGTGCCACAAGCTTTGCGGAAAACCTGGAAATTTTGGCCAGAAATGGTGAGAAGAAAAA
GCATGAAGAAGCCGCGAAGTGTGGGGGAGAAAAAGGTGGAGGCGAAGAAACAGCTCCCGGAGCA
AACTGAACAAAACCTCGCCAAGAGTGTCGGGAGGCAGGACCGTTATTCCTGCCGAGCAGGGGAG
AGAAGAGAGACCCTGAAACACGCGCCACCTATCTTTGTGGGGAGGGATAATTGAAGCGCCCTGA
GCGTGAGCATCATGTGAAAACGTGATCGCCAAGTTTCTCTCTGGGAAAGGATCTGGGATAGATT
ATACCTTGAAGTCTCCGCAAACGCTTTAGTGGAAGAAATGAAATTCCACCTCCCTCCCTTCCTC
TCTCCCTCCCTCCCTCCCTTCTCCACGCCCCCCCAACCCCCCCCCCCCGTCAAGTCTTTGGCAT
CATTATCCTCATCACTAAATCCTTCAGAGTACTGGGCGGAAAACGGTGCACACCATTCACAGAA
CTGGAGAACTCCGAGGGGCGAAAGTTAAAGGGAAAGATCTTGGATCTTCCATGCAGATCTCTTT
TCTTACACAGATATCTCTGGTGACTAGGCTTGAGGTGCTCATCAAGTTGTATGGATATCTCAAG
CACCGTTTTTTTTTTTGGGAACTAAATTCTTGCCCTTCTATTATTATTATTATTATTATTATTA
TTATTATTATTATTATTATTATTATTATTATTTTAAAGATGCCAGAGCTAGGGGAGGAAAATAG
TACTTATGCACTGCAACTTAGGATCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGT
GTGTGTGCGCGCGCGCGCGAGCGTGTGGAGAGGGGGGGCTTCTGGATTGGATCCCTATATTAAA
AGTACTTTGGCATTTTAATAAAGGGTCTCTAGATTAACACAGAAGTTCACTATGTTGGCTAACC
TTTGGATCTCTCTACATGTCATGCAGACCACACTACTAAGTCAGGGGTTGGGGACAGGAGGAGG
AAGGAGAAAGGCTAGAGGAGCTTAGGACTAAAGAAAGAAGATGGTGACATTAAACTGTGTGGGG
TCTAAGTTTTGAAGTGCATATTTTTTGATATTGCAATTAAAGTAAAATTAAAAAGAAAA

hide sequence

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:9273023	AgrOrtholog
BioCyc Gene	G2FUF-49835	BioCyc
NCBI Gene	LOC103691779	ENTREZGENE
PhenoGen	Zeb2-as1	PhenoGen
RNAcentral	URS00008E398B	RNACentral
	URS00021ED9F5	RNACentral

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2020-10-12	Zeb2-as1	ZEB2 antisense RNA 1	Zeb2os	zinc finger E-box binding homeobox 2, opposite strand	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2016-01-15	Zeb2os	zinc finger E-box binding homeobox 2, opposite strand	LOC103691779	uncharacterized LOC103691779	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2014-08-25	LOC103691779	uncharacterized LOC103691779			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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