LOC103692893 (uncharacterized LOC103692893) - Rat Genome Database

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Gene: LOC103692893 (uncharacterized LOC103692893) Rattus norvegicus
Analyze
Symbol: LOC103692893
Name: uncharacterized LOC103692893
RGD ID: 9196150
Description:
Type: ncrna
RefSeq Status: MODEL
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2771,350,554 - 71,411,463 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.0779,148,739 - 79,165,245 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Celera768,407,969 - 68,424,065 (+)NCBICelera
Cytogenetic Map7q31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in LOC103692893
327 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)7946224698011544Rat
1300132Bp182Blood pressure QTL 1823.49arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)71965431784928080Rat
10402855Bp379Blood pressure QTL 3790.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)72940968374409683Rat
1300127Srn1Serum renin concentration QTL 13.87blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)72940968384928080Rat
10755453Coatc12Coat color QTL 120coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)73111283276112832Rat
7411605Foco14Food consumption QTL 1424.10.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)73429328279293282Rat
631534Lnnr1Liver neoplastic nodule remodeling QTL 13.850.001liver integrity trait (VT:0010547)liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)73429328279293282Rat
631513Scl7Serum cholesterol level QTL 74.1blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)73796056982960569Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)741333674119109060Rat
634326Hc3Hypercalciuria QTL 32.1urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)74278731487787314Rat
10053722Scort27Serum corticosterone level QTL 272.410.0083blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)74322875088228750Rat
1358361Sradr5Stress Responsive Adrenal Weight QTL 55.55adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)743747012108555253Rat
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)743747012135012528Rat
1300149Cm6Cardiac mass QTL 64.09heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)743747099102228765Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)744421311118198041Rat
61428Scl3Serum cholesterol level QTL 33.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)74486753389867533Rat
738030Anxrr8Anxiety related response QTL 84.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)74659007091590070Rat
2293696Bmd32Bone mineral density QTL 325.10.0001femur strength trait (VT:0010010)femoral neck polar moment of inertia (CMO:0001670)74765143992651439Rat
2293707Bss32Bone structure and strength QTL 327.640.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)74765143992651439Rat
2300178Bmd54Bone mineral density QTL 545.30.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)74765143992651439Rat
2293644Bmd29Bone mineral density QTL 295.40.0001femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)74765143992651439Rat
2293667Bss42Bone structure and strength QTL 427.250.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra cross-sectional area (CMO:0001689)74765143992651439Rat
2293678Bss24Bone structure and strength QTL 246.710.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)74765143992651439Rat
2293685Bmd21Bone mineral density QTL 214.20.0003femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)74765143992651439Rat
1300151Bp181Blood pressure QTL 1813.36arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)753612714103945643Rat
2317035Aia16Adjuvant induced arthritis QTL 162.71joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)759238038104238038Rat
1298528Bp169Blood pressure QTL 1690.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)761074194106074194Rat
1559283Emca4Estrogen-induced mammary cancer QTL 43.7mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)762004452101773158Rat
1576303Ept7Estrogen-induced pituitary tumorigenesis QTL 73.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)762004452101773158Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)764002457135012528Rat
2316947Rf58Renal function QTL 587.8kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)768938720113886318Rat
2316952Pur22Proteinuria QTL 225.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)768938720113886318Rat
2316955Stl24Serum triglyceride level QTL 247.1blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)768938720113886318Rat
631540Bw9Body weight QTL 94.5body mass (VT:0001259)body weight (CMO:0000012)769736226117455174Rat
1357338Stl17Serum triglyceride level QTL 173.23blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)769736356112729554Rat
10450856Livw4Liver weight QTL 43.8liver mass (VT:0003402)liver weight (CMO:0000092)77084011872474897Rat
10450862Kidm55Kidney mass QTL 554.9kidney mass (VT:0002707)kidney weight (CMO:0000081)77084011872474897Rat


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_001838906 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001838907 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001838908 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001838909 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001838910 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001838911 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001838912 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001838913 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001844382 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001844383 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001844384 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001844385 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001844386 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001844387 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005487075 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005487076 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005487077 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005487078 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005487079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005487080 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005487081 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005487082 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005487083 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005487084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005487085 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005487086 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACYVU010000185 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XR_005487075
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2771,350,554 - 71,411,463 (+)NCBI
RefSeq Acc Id: XR_005487076
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2771,350,554 - 71,411,463 (+)NCBI
RefSeq Acc Id: XR_005487077
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2771,350,554 - 71,411,463 (+)NCBI
RefSeq Acc Id: XR_005487078
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2771,350,554 - 71,411,463 (+)NCBI
RefSeq Acc Id: XR_005487079
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2771,350,554 - 71,411,463 (+)NCBI
RefSeq Acc Id: XR_005487080
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2771,350,554 - 71,411,463 (+)NCBI
RefSeq Acc Id: XR_005487081
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2771,350,554 - 71,411,463 (+)NCBI
RefSeq Acc Id: XR_005487082
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2771,350,554 - 71,411,463 (+)NCBI
RefSeq Acc Id: XR_005487083
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2771,350,554 - 71,411,463 (+)NCBI
RefSeq Acc Id: XR_005487084
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2771,350,554 - 71,411,463 (+)NCBI
RefSeq Acc Id: XR_005487085
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2771,350,554 - 71,411,463 (+)NCBI
RefSeq Acc Id: XR_005487086
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2771,350,554 - 71,411,463 (+)NCBI

Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-33546 BioCyc
NCBI Gene LOC103692893 ENTREZGENE
PhenoGen LOC103692893 PhenoGen
RNAcentral URS0000CCE733 RNACentral
  URS0000CCF2D4 RNACentral
  URS0000CCF42C RNACentral
  URS0000CCF561 RNACentral
  URS0000CCF97C RNACentral
  URS0000CCFA64 RNACentral
  URS0000CD05F3 RNACentral
  URS0000CD076C RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-08-25 LOC103692893  uncharacterized LOC103692893      Symbol and Name status set to provisional 70820 PROVISIONAL