LOC103694242 (60S ribosomal protein L7 pseudogene) - Rat Genome Database

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Gene: LOC103694242 (60S ribosomal protein L7 pseudogene) Rattus norvegicus
Analyze
No known orthologs.
Symbol: LOC103694242
Name: 60S ribosomal protein L7 pseudogene
RGD ID: 9114442
Description: Orthologous to human RPL7 (ribosomal protein L7).
Type: pseudo (Ensembl: protein-coding)
RefSeq Status: MODEL
Previously known as: AC121415.1
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81638,005,962 - 38,006,873 (-)NCBIGRCr8
mRatBN7.21632,995,281 - 32,996,164 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1632,995,363 - 32,996,204 (-)NCBImRatBN7.2 Ensembl
mRatBN7.2 Ensembl1632,995,363 - 32,996,204 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01636,450,160 - 36,451,034 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2178,212,156 - 178,212,785 (-)NCBIRnor6.0rn6Rnor6.0
Celera1632,933,347 - 32,934,227 (-)NCBICelera
Cytogenetic Map16p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.

Genomics

Variants

.
Variants in LOC103694242
35 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2307172Activ4Activity QTL 43.710.00023locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)16133418960Rat
1354584Despr6Despair related QTL 63.10.0067locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16139533930Rat
2303566Bw90Body weight QTL 902body mass (VT:0001259)body weight (CMO:0000012)16139533930Rat
631561Hcuc2Hepatic copper content QTL 22.8liver copper amount (VT:0003065)liver total copper weight (CMO:0001507)16139533949Rat
6903319Bw114Body weight QTL 1142.70.0037body mass (VT:0001259)body weight (CMO:0000012)16143534949Rat
7411664Foco30Food consumption QTL 30110.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)16144588133Rat
1354625Despr7Despair related QTL 73.160.016locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16144977551Rat
1600378Arunc4Aerobic running capacity QTL 40.03exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)1638024580345693Rat
2293343Glom16Glomerulus QTL 167.4kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1683223646053497Rat
2312660Bw95Body weight QTL 950.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)1683223659492508Rat
2312663Slep9Serum leptin concentration QTL 90.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1683223659492508Rat
2312666Insul16Insulin level QTL 160.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1683223659492508Rat
2312669Stl23Serum triglyceride level QTL 230.01blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1683223659492508Rat
2306902Bp339Blood pressure QTL 3390.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16338015043025077Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)16422760943025077Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16422760943025077Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)16422760943025077Rat
737819Hcas4Hepatocarcinoma susceptibility QTL 44.43liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)16422760946975965Rat
61405Niddm6Non-insulin dependent diabetes mellitus QTL 63.660.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)16422760948972724Rat
61338Bp23Blood pressure QTL 234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16422760949227609Rat
737826Alc11Alcohol consumption QTL 113.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16422760960252231Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor depth of invasion (CMO:0001888)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor depth of invasion (CMO:0001888)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161769679182635055Rat
70215Niddm29Non-insulin dependent diabetes mellitus QTL 293.54blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)161900443575226532Rat
2302057Pia29Pristane induced arthritis QTL 293.60.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)162173597566735975Rat
8694453Bw172Body weight QTL 1728.330.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)162432551369325513Rat
6903294Stl30Serum triglyceride level QTL 302.60.0013blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)162515279370152793Rat
1298529Arunc1Aerobic running capacity QTL 14exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)163195152060148445Rat


Expression


Sequence

Nucleotide Sequences
GenBank Nucleotide JAXUCZ010000016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000009702   ⟹   ENSRNOP00000058859
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1632,995,363 - 32,996,204 (-)Ensembl
Protein Sequences
Ensembl Protein ENSRNOP00000058859.2
RefSeq Acc Id: ENSRNOP00000058859   ⟸   ENSRNOT00000009702
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LUE9-F1-model_v2 AlphaFold F1LUE9 1-210 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:9114442 AgrOrtholog
BioCyc Gene G2FUF-11525 BioCyc
Ensembl Genes ENSRNOG00000007402 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000009702.4 UniProtKB/TrEMBL
Gene3D-CATH 3.30.1390.20 UniProtKB/TrEMBL
InterPro L30_ferredoxin-like_sf UniProtKB/TrEMBL
  Ribosomal_L30_CS UniProtKB/TrEMBL
  Ribosomal_L30_ferredoxin-like UniProtKB/TrEMBL
  Ribosomal_L30_N UniProtKB/TrEMBL
  Ribosomal_L7/L30 UniProtKB/TrEMBL
  Ribosomal_L7_euk UniProtKB/TrEMBL
  Ribosomal_L7_euk_arc UniProtKB/TrEMBL
NCBI Gene LOC103694242 ENTREZGENE
PANTHER 60S RIBOSOMAL PROTEIN L7 UniProtKB/TrEMBL
  PTHR11524 UniProtKB/TrEMBL
Pfam Ribosomal_L30 UniProtKB/TrEMBL
  Ribosomal_L30_N UniProtKB/TrEMBL
PhenoGen LOC103694242 PhenoGen
PROSITE RIBOSOMAL_L30 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000007402 RatGTEx
Superfamily-SCOP SSF55129 UniProtKB/TrEMBL
UniProt F1LUE9_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 LOC103694242  60S ribosomal protein L7 pseudogene  AC121415.1    Data merged from RGD:15003326 737654 PROVISIONAL
2019-11-08 AC121415.1        Symbol and Name status set to provisional 45752 PROVISIONAL
2014-08-25 LOC103694242  60S ribosomal protein L7 pseudogene      Symbol and Name status set to provisional 70820 PROVISIONAL