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Gene: LOC103690313 (uncharacterized LOC103690313) Rattus norvegicus

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Symbol:

LOC103690313

Name:

uncharacterized LOC103690313

RGD ID:

9082307

Description:

Type:

ncrna

RefSeq Status:

MODEL

Previously known as:

LOC102549168; uncharacterized LOC102549168

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	57,769,401 - 57,771,226 (-)	NCBI	GRCr8	GRCr8		GRCr8
mRatBN7.2	15	51,359,800 - 51,362,026 (-)	NCBI	mRatBN7.2	mRatBN7.2
Rnor_6.0	15	58,101,893 - 58,103,895 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	15	61,697,331 - 61,699,328 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
Celera	15	50,986,741 - 50,988,742 (-)	NCBI		Celera
Cytogenetic Map	15	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

References

Genomics

Variants

Variants in LOC103690313
20 total Variants

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1300144	Rf23	Renal function QTL 23	3.61		renal blood flow trait (VT:2000006)	absolute change in renal vascular resistance (CMO:0001900)	15	44806773	104695021	Rat
152025253	Hrtrt24	Heart rate QTL 24	3.82		heart pumping trait (VT:2000009)		15	31855803	92671517	Rat
724545	Niddm54	Non-insulin dependent diabetes mellitus QTL 54		0.02	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	15	57203895	80107161	Rat
10054130	Srcrt8	Stress Responsive Cort QTL 8	2.18	0.0085	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	15	28527732	73527732	Rat
1582227	Gluco30	Glucose level QTL 30	3.6	0.0003	blood glucose amount (VT:0000188)	absolute change in blood glucose level area under curve (CMO:0002034)	15	43677244	88677244	Rat
1582228	Epfw3	Epididymal fat weight QTL 3	4.1	0.0002	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	15	43677244	88677244	Rat
1578646	Bmd18	Bone mineral density QTL 18	5.2		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	15	25285835	104695021	Rat
1578647	Bmd17	Bone mineral density QTL 17	4		femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	15	25285835	104695021	Rat
61424	Scl1	Serum cholesterol level QTL 1	7.7	0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	15	19155762	87086765	Rat
1598828	Glom14	Glomerulus QTL 14	2.5		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	15	40463152	85463152	Rat
2317750	Glom26	Glomerulus QTL 26	4.3		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	15	14926594	71614418	Rat
631550	Bw7	Body weight QTL 7	3.6		body mass (VT:0001259)	body weight (CMO:0000012)	15	22336351	67336351	Rat
1582242	Gluco28	Glucose level QTL 28	3.3	0.0008	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	15	43677244	88677244	Rat
1578660	Bss19	Bone structure and strength QTL 19	4.3		femur morphology trait (VT:0000559)	bone trabecular cross-sectional area (CMO:0002311)	15	25285835	104695021	Rat
1582244	Bw79	Body weight QTL 79	4	0.0002	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	15	43677244	88677244	Rat
1582214	Stl21	Serum triglyceride level QTL 21	3.1	0.022	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	15	43677244	88677244	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

circulatory system	ectoderm	mesenchyme	mesoderm	nervous system	renal system	sensory system	visual system
1	1	5	1	1	4	1	1

Sequence

Nucleotide Sequences


RefSeq Transcripts	XR_005494123	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_340757	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_595695	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_596212	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_596213	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAXUCZ010000015	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XR_005494123

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	57,769,401 - 57,771,180 (-)	NCBI
mRatBN7.2	15	51,359,800 - 51,362,026 (-)	NCBI

RefSeq Acc Id:

XR_596212

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	57,769,401 - 57,771,056 (-)	NCBI
mRatBN7.2	15	51,359,800 - 51,361,833 (-)	NCBI
Rnor_6.0	15	58,101,893 - 58,103,895 (-)	NCBI

Sequence:

show sequence

AGGAGAGTGGAGCGAGGGGAGAAATGCACACCCAACAGATGGAAACGCAGATGAACATACTGGC
GGAGTTTATTGGCCCAGAGTTAAAACAATACTTTGACAGAGGCAAGGTCAAAGCTAACTGGTAG
AGTTTCTAGAACATAACAATGGATCAGAAACGTTACAGAATGCTCCGGTTATAATTAACTTCGG
CTGTGTACTTAACCGTTACCGTTCTGAACGGCCTTGGCCCCGAGTTGCTCCCGTGGCCATCCTA
ACTCTCCGTTAATGTTACTAAATTACTCAGTTGTCACTGTCCACAGTGAAGGAGCAGCAAGGGC
TCGGGCTGGCAGGGTCGTTGTCCCTGAAGCCCTGCGCTTCCTTTCCCCAGCTGTAACGGACTCA
AGTAAAGAGTCTTCAGCTCTGGGTCTTGAAAGCCCTTAGATCACGATAATGAAATTTCAGCCAA
GCAATCTCGCAAATGGAAGCGCTGTGAACTGCTTGTAAGTGCTCTCTGCGTATTTCCTGAAGCT
GACTCAAGGTTGTTACCATGATTTATATTCCTCCGTCCCTAACGTCTTATATGTACTTGCAGTT
TTCCATGCTCAGCTGCTGAAATGTGTCCTTAAAGCTTACAAGCATAAAGCTTGAGGTGATACAA
TCCATTTGATGGCCTGACCCTCAGTCTTTGCCCTTTTGCAGAATCTAAGCATTTGCTTGTGGCC
TTTATCTTCACTCTGGAAGCTTGAGAAAACTGCACAGCGAACAGAGTCACTACACAGCTAGCCC
CAGTTGTTCATGCACATTACAGAGAGTCACCAAAAATCTAGGTGGCTTCTTCCACAGGCAAGAC
AATGACGTAACAGCTGTCAGATTGCCCCTTCTGCCAGAGTGAACCCAACCCAAAGAAACAGAAA
GCAGAGACAGCGATGAAAGAATGGCATTTACACCTTCAGCATGGGGAGCACGAGGCAGCAATTC
CTGAGCACAGAGGAAAATGGGAGATGTGTTACCCAGGGTCCAGCTTGCAGGGATTAGCAGTGTT
TGCAGTGTACATGCACAAGACTAAAAAAAGAATGATCACACCAAGCTATGATGGTAATAAGAAG
TGTCAAAGTATGTTCAAGACTTTTATGTCAGAAAATGGAAAAAAAACAGGAGCTAGAGAGATGG
CTCA

hide sequence

RefSeq Acc Id:

XR_596213

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	57,769,401 - 57,771,226 (-)	NCBI
mRatBN7.2	15	51,359,800 - 51,362,026 (-)	NCBI
Rnor_6.0	15	58,101,893 - 58,103,895 (-)	NCBI

Sequence:

show sequence

AGGAGAGTGGAGCGAGGGGAGAAATGCACACCCAACAGATGGAAACGCAGATGAACATACTGGC
GGAGTTTATTGGCCCAGAGTTAAAACAATACTTTGACAGAGGCAAGGTCAAAGCTAACTGGTAG
AGTTTCTAGAACATAACAATGGATCAGAAACGTTACAGAATGCTCCGGTTATAATTAACTTCGG
CTGTGTACTTAACCGTTACCGTTCTGAACGGCCTTGGCCCCGAGTTGCTCCCGTGGCCATCCTA
ACTCTCCGTTAATGTTACTAAATTACTCAGTTGTCACTGTCCACAGTGAAGGAGCAGCAAGGGC
TCGGGCTGGCAGGGTCGTTGTCCCTGAAGCCCTGCGCTTCCTTTCCCCAGCTGTAACGGACTCA
AGTAAAGAGTCTTCAGCTCTGGGTCTTGAAAGCCCTTAGATCACGATAATGAAATTTCAGCCAA
GCAATCTCGCAAATGGAAGCGCTGTGAACTGCTTGGCCTGACCCTCAGTCTTTGCCCTTTTGCA
GAATCTAAGCATTTGCTTGTGGCCTTTATCTTCACTCTGGAAGCTTGAGAAAACTGCACAGCGA
ACAGAGTCACTACACAGCTAGCCCCAGTTGTTCATGCACATTACAGAGAGTCACCAAAAATCTA
GGTGGCTTCTTCCACAGGCAAGACAATGACGTAACAGCTGTCAGATTGCCCCTTCTGCCAGAGT
GAACCCAACCCAAAGAAACAGAAAGCAGAGACAGCGATGAAAGAATGGCATTTACACCTTCAGC
ATGGGGAGCACGAGGCAGCAATTCCTGAGCACAGAGGAAAATGGGAGATGTGTTACCCAGGGTC
CAGCTTGCAGGGATTAGCAGTGTTTGCAGTGTACATGCACAAGACTAAAAAAAGAATGATCACA
CCAAGCTATGATGGTAATAAGAAGTGTCAAAGTATGTTCAAGACTTTTATGTCAGAAAATGGAA
AAAAAACAGGAGCTAGAGAGATGGCTCA

hide sequence

Additional Information

External Database Links

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-13087	BioCyc
NCBI Gene	LOC103690313	ENTREZGENE
PhenoGen	LOC103690313	PhenoGen
RNAcentral	URS0000CCFBB7	RNACentral
	URS0000CD03D0	RNACentral

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-03-09	LOC103690313	uncharacterized LOC103690313	LOC102549168	uncharacterized LOC102549168	Data merged from RGD:7524864	737654	PROVISIONAL
2014-08-25	LOC103690313	uncharacterized LOC103690313			Symbol and Name status set to provisional	70820	PROVISIONAL
2013-12-17	LOC102549168	uncharacterized LOC102549168			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

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MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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