Camk2b (calcium/calmodulin dependent protein kinase II beta) - Rat Genome Database

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Gene: Camk2b (calcium/calmodulin dependent protein kinase II beta) Chinchilla lanigera
Analyze
Symbol: Camk2b
Name: calcium/calmodulin dependent protein kinase II beta
RGD ID: 9054956
Description: ENCODES a protein that exhibits calcium/calmodulin-dependent protein kinase activity (ortholog); identical protein binding (ortholog); phospholipase binding (ortholog); INVOLVED IN activation of meiosis involved in egg activation (ortholog); apoptotic signaling pathway (ortholog); calcium ion transport (ortholog); PARTICIPATES IN calcium/calmodulin dependent kinase 2 signaling pathway; p38 MAPK signaling pathway; type II interferon signaling pathway; ASSOCIATED WITH Apnea (ortholog); autism spectrum disorder (ortholog); autosomal dominant intellectual developmental disorder 54 (ortholog); FOUND IN calcium- and calmodulin-dependent protein kinase complex (ortholog); cytosol (ortholog); dendrite (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: calcium/calmodulin-dependent protein kinase II beta; calcium/calmodulin-dependent protein kinase type II subunit beta
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554567,713,552 - 7,760,207 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554567,711,583 - 7,760,506 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Camk2b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554567,713,552 - 7,760,207 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554567,711,583 - 7,760,506 (+)NCBIChiLan1.0ChiLan1.0
CAMK2B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38744,217,154 - 44,326,013 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl744,210,019 - 44,334,577 (-)EnsemblGRCh38hg38GRCh38
GRCh37744,256,753 - 44,365,193 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36744,225,416 - 44,331,749 (-)NCBINCBI36Build 36hg18NCBI36
Build 34744,032,136 - 44,138,464NCBI
Celera744,354,715 - 44,422,313 (-)NCBICelera
Cytogenetic Map7p13NCBI
HuRef744,142,028 - 44,208,379 (-)ENTREZGENEHuRef
CHM1_1744,260,608 - 44,369,178 (-)NCBICHM1_1
T2T-CHM13v2.0744,375,741 - 44,485,432 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2744,296,255 - 44,404,749 (-)ENTREZGENE
Camk2b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39115,919,642 - 6,016,401 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl115,919,644 - 6,016,362 (-)EnsemblGRCm39 Ensembl
GRCm38115,969,629 - 6,066,357 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl115,969,644 - 6,066,362 (-)EnsemblGRCm38mm10GRCm38
MGSCv37115,869,645 - 5,965,751 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36115,869,675 - 5,965,751 (-)NCBIMGSCv36mm8
Celera116,461,702 - 6,553,628 (-)NCBICelera
Cytogenetic Map11A1NCBI
cM Map113.89NCBI
Camk2b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81485,059,166 - 85,148,121 (-)NCBIGRCr8
mRatBN7.21480,845,206 - 80,934,172 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1480,845,238 - 80,933,994 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1485,247,252 - 85,335,996 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01486,487,349 - 86,576,085 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01482,936,663 - 83,025,404 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01486,208,876 - 86,297,727 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1486,208,901 - 86,297,652 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01486,893,062 - 86,982,256 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41486,632,686 - 86,721,281 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11486,653,834 - 86,740,406 (-)NCBI
Celera1479,728,956 - 79,817,594 (-)NCBICelera
Cytogenetic Map14q21NCBI
CAMK2B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2649,128,517 - 49,238,128 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1797,453,257 - 97,562,867 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0744,930,859 - 45,040,078 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1745,001,240 - 45,110,499 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl745,001,267 - 45,110,342 (-)Ensemblpanpan1.1panPan2
CAMK2B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha162,142,154 - 2,219,094 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01614,642,707 - 14,719,698 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1614,642,688 - 14,732,697 (+)EnsemblROS_Cfam_1.0 Ensembl
UNSW_CanFamBas_1.01614,274,291 - 14,351,161 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01614,254,459 - 14,331,424 (+)NCBIUU_Cfam_GSD_1.0
Camk2b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511899,971,714 - 100,066,726 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647819,180,726 - 19,278,920 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647819,183,493 - 19,278,457 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CAMK2B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1850,861,466 - 50,956,225 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11850,862,225 - 50,956,263 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21855,764,825 - 55,851,601 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CAMK2B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12114,342,751 - 14,451,274 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2114,342,892 - 14,451,282 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660628,066,177 - 8,195,979 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Camk2b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247407,750,245 - 7,831,454 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247407,750,327 - 7,828,891 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000008854   ⟹   ENSCLAP00000008726
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554567,713,552 - 7,760,207 (+)Ensembl
Ensembl Acc Id: ENSCLAT00000008855   ⟹   ENSCLAP00000008727
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554567,714,050 - 7,760,207 (+)Ensembl
Ensembl Acc Id: ENSCLAT00000008856   ⟹   ENSCLAP00000008728
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554567,714,050 - 7,760,207 (+)Ensembl
Ensembl Acc Id: ENSCLAT00000008857   ⟹   ENSCLAP00000008729
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554567,714,050 - 7,760,207 (+)Ensembl
Ensembl Acc Id: ENSCLAT00000008858   ⟹   ENSCLAP00000008730
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554567,714,050 - 7,760,207 (+)Ensembl
Ensembl Acc Id: ENSCLAT00000008859   ⟹   ENSCLAP00000008731
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554567,714,050 - 7,760,207 (+)Ensembl
Ensembl Acc Id: ENSCLAT00000008860   ⟹   ENSCLAP00000008732
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554567,714,050 - 7,760,207 (+)Ensembl
Ensembl Acc Id: ENSCLAT00000008861   ⟹   ENSCLAP00000008733
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554567,714,065 - 7,760,207 (+)Ensembl
RefSeq Acc Id: XM_013520515   ⟹   XP_013375969
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554567,711,583 - 7,760,506 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013375969 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000008726.1
  ENSCLAP00000008727.1
  ENSCLAP00000008728.1
  ENSCLAP00000008729.1
  ENSCLAP00000008730.1
  ENSCLAP00000008731.1
  ENSCLAP00000008732.1
  ENSCLAP00000008733.1
RefSeq Acc Id: XP_013375969   ⟸   XM_013520515
- Sequence:
Ensembl Acc Id: ENSCLAP00000008726   ⟸   ENSCLAT00000008854
Ensembl Acc Id: ENSCLAP00000008727   ⟸   ENSCLAT00000008855
Ensembl Acc Id: ENSCLAP00000008728   ⟸   ENSCLAT00000008856
Ensembl Acc Id: ENSCLAP00000008729   ⟸   ENSCLAT00000008857
Ensembl Acc Id: ENSCLAP00000008730   ⟸   ENSCLAT00000008858
Ensembl Acc Id: ENSCLAP00000008731   ⟸   ENSCLAT00000008859
Ensembl Acc Id: ENSCLAP00000008732   ⟸   ENSCLAT00000008860
Ensembl Acc Id: ENSCLAP00000008733   ⟸   ENSCLAT00000008861
Protein Domains
Protein kinase


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000006106 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000008854.1 UniProtKB/TrEMBL
  ENSCLAT00000008855.1 UniProtKB/TrEMBL
  ENSCLAT00000008856.1 UniProtKB/TrEMBL
  ENSCLAT00000008857.1 UniProtKB/TrEMBL
  ENSCLAT00000008858.1 UniProtKB/TrEMBL
  ENSCLAT00000008859.1 UniProtKB/TrEMBL
  ENSCLAT00000008860.1 UniProtKB/TrEMBL
  ENSCLAT00000008861.1 UniProtKB/TrEMBL
Gene3D-CATH 3.10.450.50 UniProtKB/TrEMBL
  6.10.140.620 UniProtKB/TrEMBL
  Phosphorylase Kinase, domain 1 UniProtKB/TrEMBL
  Transferase(Phosphotransferase) domain 1 UniProtKB/TrEMBL
InterPro Ca/CaM-dep_prot_kinase-assoc UniProtKB/TrEMBL
  Kinase-like_dom_sf UniProtKB/TrEMBL
  NTF2-like_dom_sf UniProtKB/TrEMBL
  Prot_kinase_dom UniProtKB/TrEMBL
  Ser/Thr_kinase_AS UniProtKB/TrEMBL
NCBI Gene Camk2b ENTREZGENE
PANTHER SERINE/THREONINE-PROTEIN KINASE UniProtKB/TrEMBL
Pfam CaMKII_AD UniProtKB/TrEMBL
  Pkinase UniProtKB/TrEMBL
PROSITE PROTEIN_KINASE_DOM UniProtKB/TrEMBL
  PROTEIN_KINASE_ST UniProtKB/TrEMBL
SMART S_TKc UniProtKB/TrEMBL
Superfamily-SCOP SSF54427 UniProtKB/TrEMBL
  SSF56112 UniProtKB/TrEMBL
UniProt A0A8C2V145_CHILA UniProtKB/TrEMBL
  A0A8C2V1W3_CHILA UniProtKB/TrEMBL
  A0A8C2V280_CHILA UniProtKB/TrEMBL
  A0A8C2V3C8_CHILA UniProtKB/TrEMBL
  A0A8C2V4N7_CHILA UniProtKB/TrEMBL
  A0A8C2V672_CHILA UniProtKB/TrEMBL
  A0A8C2V728_CHILA UniProtKB/TrEMBL
  A0A8C2V7M0_CHILA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Camk2b  calcium/calmodulin dependent protein kinase II beta    calcium/calmodulin-dependent protein kinase II beta  Symbol and/or name change 5135510 APPROVED