Nr4a1 (nuclear receptor subfamily 4 group A member 1) - Rat Genome Database

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Gene: Nr4a1 (nuclear receptor subfamily 4 group A member 1) Chinchilla lanigera
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Symbol: Nr4a1
Name: nuclear receptor subfamily 4 group A member 1
RGD ID: 9007529
Description: ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); glucocorticoid receptor binding (ortholog); INVOLVED IN apoptotic process (ortholog); cell migration involved in sprouting angiogenesis (ortholog); cellular response to corticotropin-releasing hormone stimulus (ortholog); ASSOCIATED WITH Albuminuria (ortholog); blood pressure trait (ortholog); blood urea nitrogen amount (ortholog); FOUND IN cytosol (ortholog); nuclear membrane (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: nuclear receptor subfamily 4, group A, member 1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555472,404,532 - 2,431,050 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555472,404,532 - 2,426,882 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component


References


Genomics

Comparative Map Data
Nr4a1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555472,404,532 - 2,431,050 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555472,404,532 - 2,426,882 (+)NCBIChiLan1.0ChiLan1.0
NR4A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1252,022,832 - 52,059,507 (+)EnsemblGRCh38hg38GRCh38
GRCh381252,022,832 - 52,059,507 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371252,416,616 - 52,453,287 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361250,731,458 - 50,739,554 (+)NCBINCBI36hg18NCBI36
Build 341250,723,762 - 50,736,019NCBI
Celera1251,247,867 - 51,255,961 (+)NCBI
Cytogenetic Map12q13.13NCBI
HuRef1249,449,770 - 49,486,519 (+)NCBIHuRef
CHM1_11252,382,884 - 52,419,560 (+)NCBICHM1_1
Nr4a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3915101,151,788 - 101,172,676 (+)NCBIGRCm39mm39
GRCm39 Ensembl15101,152,150 - 101,172,676 (+)Ensembl
GRCm3815101,253,902 - 101,274,795 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl15101,254,269 - 101,274,795 (+)EnsemblGRCm38mm10GRCm38
MGSCv3715101,097,277 - 101,105,226 (+)NCBIGRCm37mm9NCBIm37
MGSCv3615101,094,896 - 101,102,826 (+)NCBImm8
Celera15103,414,983 - 103,422,853 (+)NCBICelera
Cytogenetic Map15F1NCBI
Nr4a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.27132,368,399 - 132,389,300 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl7132,374,840 - 132,389,297 (+)Ensembl
Rnor_6.07142,899,358 - 142,920,216 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7142,905,758 - 142,920,216 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07140,700,242 - 140,721,073 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47140,012,807 - 140,020,590 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.17140,089,243 - 140,097,024 (+)NCBI
Celera7128,846,928 - 128,854,640 (+)NCBICelera
Cytogenetic Map7q36NCBI
NR4A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11237,480,300 - 37,498,290 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1237,480,300 - 37,501,188 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01236,703,903 - 36,740,211 (-)NCBIMhudiblu_PPA_v0panPan3
NR4A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1272,947,729 - 2,965,045 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl272,891,053 - 2,955,655 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2743,300,499 - 43,308,433 (+)NCBI
ROS_Cfam_1.0272,944,790 - 2,966,939 (-)NCBI
UMICH_Zoey_3.1272,961,332 - 2,969,256 (-)NCBI
UNSW_CanFamBas_1.0272,947,820 - 2,955,733 (-)NCBI
UU_Cfam_GSD_1.02743,698,715 - 43,706,655 (+)NCBI
Nr4a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494563,656,496 - 63,678,740 (-)NCBI
SpeTri2.0NW_0049365129,486,096 - 9,508,338 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NR4A1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11148,208,354 - 48,232,857 (+)NCBI
ChlSab1.1 Ensembl1148,208,587 - 48,233,063 (+)Ensembl
Vero_WHO_p1.0NW_023666037197,859,302 - 197,884,070 (-)NCBI
Nr4a1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624816271,345 - 288,265 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000001236   ⟹   ENSCLAP00000001195
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555472,404,532 - 2,431,050 (+)Ensembl
RefSeq Acc Id: XM_005411924   ⟹   XP_005411981
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555472,418,541 - 2,426,882 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005411925   ⟹   XP_005411982
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555472,404,532 - 2,426,882 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005411981 (Get FASTA)   NCBI Sequence Viewer  
  XP_005411982 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005411982   ⟸   XM_005411925
- Sequence:
RefSeq Acc Id: XP_005411981   ⟸   XM_005411924
- Sequence:
RefSeq Acc Id: ENSCLAP00000001195   ⟸   ENSCLAT00000001236


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000000908 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000001195 ENTREZGENE
Ensembl Transcript ENSCLAT00000001236 ENTREZGENE
NCBI Gene Nr4a1 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Nr4a1  nuclear receptor subfamily 4 group A member 1    nuclear receptor subfamily 4, group A, member 1  Symbol and/or name change 5135510 APPROVED