Actb (actin beta) - Rat Genome Database

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Gene: Actb (actin beta) Chinchilla lanigera
Analyze
Symbol: Actb
Name: actin beta
RGD ID: 8979037
Description: ENCODES a protein that exhibits ATP hydrolysis activity (ortholog); identical protein binding (ortholog); kinesin binding (ortholog); INVOLVED IN adherens junction assembly (ortholog); apical protein localization (ortholog); axonogenesis (ortholog); PARTICIPATES IN auditory mechanotransduction pathway; INO80 family mediated chromatin remodeling pathway; mitochondria transport pathway; ASSOCIATED WITH Aminoacylase 1 Deficiency (ortholog); Animal Mammary Neoplasms (ortholog); Baraitser-Winter syndrome (ortholog); FOUND IN actin cytoskeleton (ortholog); adherens junction (ortholog); apical junction complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: actin, beta; actin, cytoplasmic 1; beta-actin
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546010,356,699 - 10,361,585 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495546010,358,100 - 10,361,585 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:16672162  


Genomics

Comparative Map Data
Actb
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546010,356,699 - 10,361,585 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495546010,358,100 - 10,361,585 (-)NCBIChiLan1.0ChiLan1.0
ACTB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3875,527,148 - 5,530,601 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl75,526,409 - 5,563,902 (-)EnsemblGRCh38hg38GRCh38
GRCh3775,566,779 - 5,570,232 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3675,533,312 - 5,536,747 (-)NCBINCBI36Build 36hg18NCBI36
Build 3475,340,026 - 5,343,462NCBI
Celera75,526,560 - 5,530,009 (-)NCBICelera
Cytogenetic Map7p22.1NCBI
HuRef75,479,343 - 5,482,774 (-)NCBIHuRef
CHM1_175,566,362 - 5,569,815 (-)NCBICHM1_1
T2T-CHM13v2.075,644,671 - 5,648,124 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v275,613,124 - 5,616,577 (-)NCBI
Actb
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395142,888,870 - 142,892,509 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5142,888,870 - 142,892,509 (-)EnsemblGRCm39 Ensembl
GRCm385142,903,115 - 142,907,976 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5142,903,115 - 142,906,754 (-)EnsemblGRCm38mm10GRCm38
MGSCv375143,664,795 - 143,668,403 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365143,168,256 - 143,171,864 (-)NCBIMGSCv36mm8
Celera5139,951,533 - 139,955,141 (-)NCBICelera
Cytogenetic Map5G2NCBI
cM Map581.8NCBI
Actb
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81216,776,664 - 16,779,634 (+)NCBIGRCr8
mRatBN7.21211,663,112 - 11,666,697 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1211,663,109 - 11,672,877 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1212,473,135 - 12,476,105 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01213,096,401 - 13,099,371 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01212,127,796 - 12,130,766 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01213,715,843 - 13,718,813 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1213,715,843 - 13,718,841 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01215,745,856 - 15,749,440 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41212,047,070 - 12,050,040 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11212,076,997 - 12,079,967 (+)NCBI
Celera1213,452,443 - 13,455,413 (+)NCBICelera
Cytogenetic Map12p11NCBI
ACTB
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2610,493,693 - 10,497,227 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1758,818,394 - 58,821,932 (-)NCBINHGRI_mPanPan1
ACTB
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1612,421,006 - 12,424,449 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl612,418,932 - 12,462,845 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha613,893,047 - 13,896,436 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0612,557,673 - 12,561,075 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl612,557,667 - 12,561,086 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1612,367,765 - 12,371,152 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0612,301,595 - 12,304,986 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0612,578,988 - 12,582,384 (+)NCBIUU_Cfam_GSD_1.0
Actb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344140,675,973 - 140,679,567 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936765667,053 - 670,672 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936765667,107 - 670,627 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ACTB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl34,082,216 - 4,090,356 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.134,084,275 - 4,090,383 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.234,729,278 - 4,732,693 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ACTB
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12816,195,676 - 16,197,161 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1252,426,752 - 52,427,879 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660905,777,528 - 5,781,244 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Actb
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474028,087,736 - 28,090,512 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474028,087,051 - 28,090,359 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000019446   ⟹   ENSCLAP00000019259
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495546010,356,699 - 10,361,585 (-)Ensembl
Ensembl Acc Id: ENSCLAT00000019447   ⟹   ENSCLAP00000019260
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495546010,356,699 - 10,360,799 (-)Ensembl
Ensembl Acc Id: ENSCLAT00000019448   ⟹   ENSCLAP00000019261
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495546010,358,690 - 10,360,544 (-)Ensembl
Ensembl Acc Id: ENSCLAT00000019449   ⟹   ENSCLAP00000019262
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495546010,359,466 - 10,360,466 (-)Ensembl
Ensembl Acc Id: ENSCLAT00000019450   ⟹   ENSCLAP00000019263
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495546010,359,548 - 10,360,544 (-)Ensembl
RefSeq Acc Id: XM_005397842   ⟹   XP_005397899
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495546010,358,100 - 10,361,585 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005397899 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein ABI22175 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000019259
  ENSCLAP00000019259.1
  ENSCLAP00000019260.1
  ENSCLAP00000019262.1
  ENSCLAP00000019263.1
RefSeq Acc Id: XP_005397899   ⟸   XM_005397842
- UniProtKB: A0A8C2VXZ2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000019263   ⟸   ENSCLAT00000019450
Ensembl Acc Id: ENSCLAP00000019261   ⟸   ENSCLAT00000019448
Ensembl Acc Id: ENSCLAP00000019262   ⟸   ENSCLAT00000019449
Ensembl Acc Id: ENSCLAP00000019259   ⟸   ENSCLAT00000019446
Ensembl Acc Id: ENSCLAP00000019260   ⟸   ENSCLAT00000019447


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000013196 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000019446 ENTREZGENE
  ENSCLAT00000019446.1 UniProtKB/TrEMBL
  ENSCLAT00000019447.1 UniProtKB/TrEMBL
  ENSCLAT00000019449.1 UniProtKB/TrEMBL
  ENSCLAT00000019450.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.420.40 UniProtKB/TrEMBL
  Actin, Chain A, domain 2 UniProtKB/TrEMBL
  Actin, Chain A, domain 4 UniProtKB/TrEMBL
InterPro Actin UniProtKB/TrEMBL
  Actin/actin-like_CS UniProtKB/TrEMBL
  Actin_CS UniProtKB/TrEMBL
  ATPase_NBD UniProtKB/TrEMBL
NCBI Gene Actb ENTREZGENE
PANTHER PTHR11937 UniProtKB/TrEMBL
Pfam Actin UniProtKB/TrEMBL
PRINTS ACTIN UniProtKB/TrEMBL
PROSITE ACTINS_1 UniProtKB/TrEMBL
  ACTINS_2 UniProtKB/TrEMBL
  ACTINS_ACT_LIKE UniProtKB/TrEMBL
SMART ACTIN UniProtKB/TrEMBL
Superfamily-SCOP SSF53067 UniProtKB/TrEMBL
UniProt A0A8C2VQP9_CHILA UniProtKB/TrEMBL
  A0A8C2VQS2_CHILA UniProtKB/TrEMBL
  A0A8C2VTA4_CHILA UniProtKB/TrEMBL
  A0A8C2VXZ2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Actb  actin beta    actin, beta  Symbol and/or name change 5135510 APPROVED