Sap30l (SAP30 like) - Rat Genome Database

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Gene: Sap30l (SAP30 like) Chinchilla lanigera
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Symbol: Sap30l
Name: SAP30 like
RGD ID: 8951152
Description: ENCODES a protein that exhibits DNA binding (ortholog); histone binding (ortholog); non-sequence-specific DNA binding, bending (ortholog); INVOLVED IN negative regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); polycystic ovary syndrome (ortholog); FOUND IN fibrillar center (ortholog); histone deacetylase complex (ortholog); nucleolus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: histone deacetylase complex subunit SAP30L; SAP30-like
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554088,827,738 - 8,832,588 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554088,827,744 - 8,832,588 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Sap30l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554088,827,738 - 8,832,588 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554088,827,744 - 8,832,588 (+)NCBIChiLan1.0ChiLan1.0
SAP30L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385154,445,997 - 154,461,053 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5154,445,997 - 154,461,053 (+)EnsemblGRCh38hg38GRCh38
GRCh375153,825,557 - 153,840,613 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365153,805,776 - 153,816,067 (+)NCBINCBI36Build 36hg18NCBI36
Celera5149,901,175 - 149,916,278 (+)NCBICelera
Cytogenetic Map5q33.2NCBI
HuRef5148,966,241 - 148,981,334 (+)NCBIHuRef
CHM1_15153,256,318 - 153,273,030 (+)NCBICHM1_1
T2T-CHM13v2.05154,979,944 - 154,995,012 (+)NCBIT2T-CHM13v2.0
Sap30l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391157,692,439 - 57,705,707 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1157,692,463 - 57,701,043 (+)EnsemblGRCm39 Ensembl
GRCm381157,801,637 - 57,810,615 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1157,801,637 - 57,810,217 (+)EnsemblGRCm38mm10GRCm38
MGSCv371157,615,139 - 57,624,117 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361157,617,832 - 57,626,810 (+)NCBIMGSCv36mm8
Celera1162,554,055 - 62,562,570 (+)NCBICelera
Cytogenetic Map11B1.3NCBI
cM Map1135.27NCBI
Sap30l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81042,480,201 - 42,488,139 (+)NCBIGRCr8
mRatBN7.21041,979,730 - 41,992,307 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1041,979,687 - 41,987,658 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1046,642,271 - 46,650,201 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01046,132,533 - 46,140,459 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01041,636,157 - 41,644,084 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01043,224,151 - 43,231,864 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1043,224,269 - 43,231,611 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01043,023,126 - 43,031,220 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41043,396,414 - 43,404,655 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11043,410,173 - 43,418,013 (+)NCBI
Celera1041,271,789 - 41,279,601 (+)NCBICelera
Cytogenetic Map10q22NCBI
SAP30L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24149,653,189 - 149,668,266 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15147,792,734 - 147,807,812 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05149,847,937 - 149,863,052 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15155,846,056 - 155,861,300 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5155,846,866 - 155,856,273 (+)Ensemblpanpan1.1panPan2
SAP30L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1455,247,912 - 55,261,655 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl455,252,938 - 55,262,207 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha455,139,143 - 55,152,822 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0455,682,409 - 55,696,086 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl455,687,428 - 55,696,091 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1455,512,820 - 55,526,494 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0455,611,261 - 55,624,938 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0456,113,840 - 56,127,525 (-)NCBIUU_Cfam_GSD_1.0
Sap30l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213109,856,463 - 109,870,339 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365158,305,799 - 8,319,685 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365158,305,809 - 8,319,685 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SAP30L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1668,695,900 - 68,709,742 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11668,695,892 - 68,709,952 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21674,604,899 - 74,619,284 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SAP30L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12356,900,806 - 56,916,238 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2356,900,843 - 56,916,259 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603420,747,414 - 20,762,855 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sap30l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473334,744,554 - 34,757,764 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473334,744,638 - 34,757,727 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000016341   ⟹   ENSCLAP00000016177
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554088,827,738 - 8,832,588 (+)Ensembl
RefSeq Acc Id: XM_005376194   ⟹   XP_005376251
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554088,827,744 - 8,832,588 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005376251 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000016177
  ENSCLAP00000016177.1
RefSeq Acc Id: XP_005376251   ⟸   XM_005376194
- Sequence:
Ensembl Acc Id: ENSCLAP00000016177   ⟸   ENSCLAT00000016341

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000011128 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000016341 ENTREZGENE
  ENSCLAT00000016341.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.1800.30 UniProtKB/TrEMBL
  6.10.160.20 UniProtKB/TrEMBL
InterPro His_deAcase_SAP30/SAP30L UniProtKB/TrEMBL
  SAP30_C_sf UniProtKB/TrEMBL
  SAP30_Sin3-bd UniProtKB/TrEMBL
  SAP30_zn-finger UniProtKB/TrEMBL
NCBI Gene Sap30l ENTREZGENE
PANTHER HISTONE DEACETYLASE COMPLEX SUBUNIT SAP30L UniProtKB/TrEMBL
  PTHR13286 UniProtKB/TrEMBL
Pfam SAP30_Sin3_bdg UniProtKB/TrEMBL
  zf-SAP30 UniProtKB/TrEMBL
UniProt A0A8C2VIL3_CHILA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-07-26 Sap30l  SAP30 like    SAP30-like  Symbol and/or name change 5135510 APPROVED