Cebpg (CCAAT enhancer binding protein gamma) - Rat Genome Database

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Gene: Cebpg (CCAAT enhancer binding protein gamma) Chinchilla lanigera
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Symbol: Cebpg
Name: CCAAT enhancer binding protein gamma
RGD ID: 8933016
Description: ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); INVOLVED IN B cell differentiation (ortholog); enucleate erythrocyte differentiation (ortholog); immune response (ortholog); ASSOCIATED WITH hereditary spastic paraplegia 75 (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog); RNA polymerase II transcription regulator complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: CCAAT/enhancer binding protein (C/EBP), gamma; CCAAT/enhancer binding protein gamma; CCAAT/enhancer-binding protein gamma
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554683,137,106 - 3,141,733 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554683,137,106 - 3,141,733 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Cebpg
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554683,137,106 - 3,141,733 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554683,137,106 - 3,141,733 (+)NCBIChiLan1.0ChiLan1.0
CEBPG
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381933,373,709 - 33,382,686 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1933,373,685 - 33,382,686 (+)EnsemblGRCh38hg38GRCh38
GRCh371933,864,615 - 33,873,592 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361938,556,449 - 38,565,432 (+)NCBINCBI36Build 36hg18NCBI36
Build 341938,556,448 - 38,565,431NCBI
Celera1930,558,181 - 30,567,164 (+)NCBICelera
Cytogenetic Map19q13.11NCBI
HuRef1930,365,211 - 30,374,228 (+)NCBIHuRef
CHM1_11933,865,529 - 33,874,546 (+)NCBICHM1_1
T2T-CHM13v2.01935,893,494 - 35,902,471 (+)NCBIT2T-CHM13v2.0
Cebpg
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39734,745,847 - 34,755,991 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl734,745,847 - 34,755,998 (-)EnsemblGRCm39 Ensembl
GRCm38735,046,422 - 35,056,566 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl735,046,422 - 35,056,573 (-)EnsemblGRCm38mm10GRCm38
MGSCv37735,831,441 - 35,841,585 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36734,755,545 - 34,765,263 (-)NCBIMGSCv36mm8
Celera730,182,296 - 30,192,439 (-)NCBICelera
Cytogenetic Map7B2NCBI
cM Map720.91NCBI
Cebpg
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8196,820,981 - 96,829,736 (-)NCBIGRCr8
mRatBN7.2187,683,060 - 87,692,772 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl187,684,019 - 87,694,569 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx193,083,770 - 93,090,520 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01101,549,756 - 101,556,506 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0194,842,069 - 94,848,819 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0191,286,956 - 91,297,459 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl191,287,917 - 91,296,656 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0192,417,890 - 92,442,666 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4187,552,695 - 87,559,447 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1187,630,805 - 87,637,558 (-)NCBI
Celera182,038,947 - 82,045,699 (-)NCBICelera
Cytogenetic Map1q21NCBI
CEBPG
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22039,345,539 - 39,354,475 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11941,345,573 - 41,354,513 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01930,295,603 - 30,304,984 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11939,039,837 - 39,049,671 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1939,046,219 - 39,046,671 (+)Ensemblpanpan1.1panPan2
CEBPG
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11118,777,110 - 118,784,397 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1118,778,224 - 118,778,667 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1118,176,203 - 118,186,035 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01119,373,710 - 119,383,542 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1119,376,715 - 119,377,158 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11118,934,395 - 118,944,213 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01118,560,906 - 118,570,734 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01119,619,593 - 119,629,416 (-)NCBIUU_Cfam_GSD_1.0
Cebpg
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244093499,201,634 - 9,210,667 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365702,438,187 - 2,438,639 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365702,435,672 - 2,439,056 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CEBPG
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl643,164,919 - 43,174,990 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1643,164,902 - 43,175,002 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2638,712,133 - 38,722,192 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CEBPG
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1628,415,448 - 28,424,463 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660736,139,851 - 6,148,871 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cebpg
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247949,729,876 - 9,736,516 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247949,727,616 - 9,736,729 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000016360   ⟹   ENSCLAP00000016196
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554683,137,106 - 3,141,733 (+)Ensembl
RefSeq Acc Id: XM_005399985   ⟹   XP_005400042
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554683,137,106 - 3,141,733 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005400042 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000016196
  ENSCLAP00000016196.1
RefSeq Acc Id: XP_005400042   ⟸   XM_005399985
- UniProtKB: A0A8C2VMQ4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000016196   ⟸   ENSCLAT00000016360
Protein Domains
bZIP


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000011142 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000016360 ENTREZGENE
  ENSCLAT00000016360.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.170 UniProtKB/TrEMBL
InterPro bZIP UniProtKB/TrEMBL
  bZIP_sf UniProtKB/TrEMBL
  C/EBP UniProtKB/TrEMBL
NCBI Gene Cebpg ENTREZGENE
PANTHER CCAAT/ENHANCER BINDING PROTEIN UniProtKB/TrEMBL
  CCAAT/ENHANCER-BINDING PROTEIN GAMMA UniProtKB/TrEMBL
Pfam bZIP_2 UniProtKB/TrEMBL
PROSITE BZIP UniProtKB/TrEMBL
SMART BRLZ UniProtKB/TrEMBL
Superfamily-SCOP SSF57959 UniProtKB/TrEMBL
UniProt A0A8C2VMQ4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-02-27 Cebpg  CCAAT enhancer binding protein gamma    CCAAT/enhancer binding protein gamma  Symbol and/or name change 5135510 APPROVED
2016-08-03 Cebpg  CCAAT/enhancer binding protein gamma    CCAAT/enhancer binding protein (C/EBP), gamma  Symbol and/or name change 5135510 APPROVED