Asip (agouti signaling protein) - Rat Genome Database

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Pathways
Gene: Asip (agouti signaling protein) Chinchilla lanigera
Analyze
Symbol: Asip
Name: agouti signaling protein
RGD ID: 8928916
Description: ENCODES a protein that exhibits melanocortin receptor binding (ortholog); type 3 melanocortin receptor binding (ortholog); type 4 melanocortin receptor binding (ortholog); INVOLVED IN adult feeding behavior (ortholog); epigenetic programming in the zygotic pronuclei (ortholog); epigenetic regulation of gene expression (ortholog); PARTICIPATES IN insulin responsive facilitative sugar transporter mediated glucose transport pathway; melanocortin system pathway; ASSOCIATED WITH basal cell carcinoma (ortholog); coat/hair pigmentation trait (ortholog); dermatitis (ortholog); FOUND IN extracellular space (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542227,020,386 - 27,057,626 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542227,021,810 - 27,150,339 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Experimental Data Annotations    Click to see Annotation Detail View

Vertebrate Trait
TermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
coat/hair pigmentation trait  ISOASIP (Canis lupus familiaris)9068941Coat colour and agoutiOMIAPMID:12692166 more ...
coat/hair pigmentation trait  ISOASIP (Canis lupus familiaris)9068941Coat colour and saddle tan vs black-and-tanOMIAPMID:23519866 more ...

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Experimental Data Annotations     Click to see Annotation Detail View

Vertebrate Trait

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Asip
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542227,020,386 - 27,057,626 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542227,021,810 - 27,150,339 (-)NCBIChiLan1.0ChiLan1.0
ASIP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382034,186,493 - 34,269,344 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2034,194,569 - 34,269,344 (+)EnsemblGRCh38hg38GRCh38
GRCh372032,782,368 - 32,857,150 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362032,311,832 - 32,320,809 (+)NCBINCBI36Build 36hg18NCBI36
Build 342032,311,831 - 32,320,809NCBI
Celera2029,597,653 - 29,606,630 (+)NCBICelera
Cytogenetic Map20q11.22NCBI
HuRef2029,629,973 - 29,638,950 (+)NCBIHuRef
CHM1_12032,749,256 - 32,758,241 (+)NCBICHM1_1
T2T-CHM13v2.02035,912,881 - 35,992,459 (+)NCBIT2T-CHM13v2.0
a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392154,792,519 - 154,892,932 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2154,633,322 - 154,892,932 (+)EnsemblGRCm39 Ensembl
GRCm382154,950,599 - 155,051,012 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2155,018,266 - 155,027,104 (+)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl2154,791,402 - 155,051,012 (+)EnsemblGRCm38mm10GRCm38
MGSCv372154,839,306 - 154,876,748 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362154,705,018 - 154,742,423 (+)NCBIMGSCv36mm8
Celera2160,940,588 - 160,977,934 (+)NCBICelera
Cytogenetic Map2H1NCBI
cM Map276.83NCBI
Asip
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.23143,473,584 - 143,561,170 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3143,555,696 - 143,561,171 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3147,341,174 - 147,428,809 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03155,958,462 - 156,046,095 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03153,697,992 - 153,785,636 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03150,492,010 - 150,579,870 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3150,574,473 - 150,579,870 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03156,860,395 - 156,949,277 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43145,445,175 - 145,536,831 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13145,350,796 - 145,442,453 (+)NCBI
Celera3142,203,571 - 142,291,520 (+)NCBICelera
Cytogenetic Map3q41NCBI
ASIP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan12039,980,671 - 39,990,897 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02030,583,038 - 30,592,726 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12031,718,169 - 31,727,217 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2031,718,169 - 31,727,217 (+)Ensemblpanpan1.1panPan2
ASIP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12423,338,757 - 23,393,913 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2423,354,888 - 23,393,896 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2422,999,470 - 23,041,722 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02424,041,356 - 24,084,629 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2424,041,485 - 24,084,612 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12423,334,340 - 23,373,386 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02423,428,191 - 23,467,532 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02423,865,404 - 23,906,575 (+)NCBIUU_Cfam_GSD_1.0
Asip
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640172,298,779 - 172,407,882 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365616,341,623 - 6,346,458 (-)EnsemblSpeTri2.0
SpeTri2.0NW_0049365616,341,667 - 6,346,440 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ASIP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1737,545,474 - 37,718,779 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11737,542,615 - 37,718,787 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21742,538,122 - 42,686,968 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ASIP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1238,479,328 - 38,568,756 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605088,288,816 - 88,382,787 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Asip
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248425,079,499 - 5,084,933 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248425,079,499 - 5,084,933 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000025283   ⟹   ENSCLAP00000025039
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495542227,020,386 - 27,057,626 (-)Ensembl
RefSeq Acc Id: XM_005384833   ⟹   XP_005384890
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542227,021,810 - 27,057,592 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005384834   ⟹   XP_005384891
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542227,021,810 - 27,150,339 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005384890 (Get FASTA)   NCBI Sequence Viewer  
  XP_005384891 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000025039
  ENSCLAP00000025039.1
RefSeq Acc Id: XP_005384891   ⟸   XM_005384834
- UniProtKB: A0A8C2YUW1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005384890   ⟸   XM_005384833
- UniProtKB: A0A8C2YUW1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000025039   ⟸   ENSCLAT00000025283
Protein Domains
Agouti


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000017188 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000025283 ENTREZGENE
  ENSCLAT00000025283.1 UniProtKB/TrEMBL
Gene3D-CATH 4.10.760.10 UniProtKB/TrEMBL
InterPro Agouti UniProtKB/TrEMBL
  Agouti_dom UniProtKB/TrEMBL
  Agouti_dom_sf UniProtKB/TrEMBL
NCBI Gene Asip ENTREZGENE
PANTHER AGOUTI-SIGNALING PROTEIN UniProtKB/TrEMBL
  PTHR16551 UniProtKB/TrEMBL
Pfam Agouti UniProtKB/TrEMBL
PROSITE AGOUTI_1 UniProtKB/TrEMBL
  AGOUTI_2 UniProtKB/TrEMBL
  PROKAR_LIPOPROTEIN UniProtKB/TrEMBL
SMART Agouti UniProtKB/TrEMBL
Superfamily-SCOP SSF57055 UniProtKB/TrEMBL
UniProt A0A8C2YUW1 ENTREZGENE, UniProtKB/TrEMBL