Pam16 (presequence translocase associated motor 16) - Rat Genome Database

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Gene: Pam16 (presequence translocase associated motor 16) Chinchilla lanigera
Analyze
Symbol: Pam16
Name: presequence translocase associated motor 16
RGD ID: 8920424
Description: INVOLVED IN DNA biosynthetic process (ortholog); negative regulation of apoptotic DNA fragmentation (ortholog); negative regulation of apoptotic process (ortholog); PARTICIPATES IN presequence pathway of mitochondrial protein import; ASSOCIATED WITH epilepsy (ortholog); idiopathic generalized epilepsy (ortholog); Kohlschutter-Tonz syndrome (ortholog); FOUND IN cytoplasm (ortholog); matrix side of mitochondrial inner membrane (ortholog); mitochondrial matrix (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: mitochondrial import inner membrane translocase subunit TIM16; presequence translocase associated motor 16 homolog; presequence translocase-associated motor 16 homolog (S. cerevisiae)
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544213,087,092 - 13,097,048 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544213,087,082 - 13,097,048 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Pam16
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544213,087,092 - 13,097,048 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544213,087,082 - 13,097,048 (+)NCBIChiLan1.0ChiLan1.0
PAM16
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38164,340,251 - 4,351,321 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl164,331,549 - 4,355,607 (-)EnsemblGRCh38hg38GRCh38
GRCh37164,390,252 - 4,401,322 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36164,330,253 - 4,341,301 (-)NCBINCBI36Build 36hg18NCBI36
Celera164,597,200 - 4,610,208 (-)NCBICelera
Cytogenetic Map16p13.3NCBI
HuRef164,357,104 - 4,368,547 (-)NCBIHuRef
CHM1_1164,390,188 - 4,401,147 (-)NCBICHM1_1
T2T-CHM13v2.0164,367,543 - 4,380,493 (-)NCBIT2T-CHM13v2.0
Pam16
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39164,434,330 - 4,442,810 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl164,434,328 - 4,442,852 (-)EnsemblGRCm39 Ensembl
GRCm38164,616,466 - 4,624,946 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl164,616,464 - 4,624,988 (-)EnsemblGRCm38mm10GRCm38
MGSCv37164,616,466 - 4,624,946 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36164,531,694 - 4,540,174 (-)NCBIMGSCv36mm8
Celera165,245,931 - 5,254,413 (-)NCBICelera
Cytogenetic Map16A1NCBI
cM Map162.45NCBI
Pam16
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81011,449,316 - 11,457,071 (+)NCBIGRCr8
mRatBN7.21010,942,534 - 10,950,654 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1010,943,001 - 10,950,649 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1015,651,764 - 15,659,342 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01015,140,582 - 15,148,160 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01010,809,734 - 10,817,306 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01011,146,359 - 11,153,936 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1011,146,359 - 11,153,936 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0109,911,717 - 9,919,294 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41011,072,402 - 11,079,980 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera109,905,330 - 9,912,908 (+)NCBICelera
Cytogenetic Map10q12NCBI
PAM16
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2184,847,319 - 4,883,025 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1168,631,732 - 8,675,724 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0163,243,435 - 3,248,815 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1 Ensembl164,418,006 - 4,515,038 (-)Ensemblpanpan1.1panPan2
PAM16
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1637,040,484 - 37,047,708 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha638,368,787 - 38,376,010 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0637,244,809 - 37,252,032 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl637,184,569 - 37,252,759 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1637,039,040 - 37,046,262 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0636,932,206 - 36,939,429 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0637,333,506 - 37,340,730 (+)NCBIUU_Cfam_GSD_1.0
Pam16
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344106,547,828 - 106,555,515 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936694153,959 - 161,635 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936694153,958 - 161,635 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC100513346
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl337,928,096 - 37,985,151 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1337,928,098 - 38,005,619 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2338,983,207 - 39,040,262 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PAM16
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.154,020,116 - 4,031,233 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366606826,660,330 - 26,671,448 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pam16
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474618,235,774 - 18,237,603 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000024920   ⟹   ENSCLAP00000024682
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495544213,087,092 - 13,097,048 (+)Ensembl
RefSeq Acc Id: XM_005391299   ⟹   XP_005391356
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495544213,087,082 - 13,096,888 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005391300   ⟹   XP_005391357
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495544213,087,254 - 13,096,888 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005391301   ⟹   XP_005391358
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495544213,087,092 - 13,097,048 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005391356 (Get FASTA)   NCBI Sequence Viewer  
  XP_005391357 (Get FASTA)   NCBI Sequence Viewer  
  XP_005391358 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000024682
  ENSCLAP00000024682.1
RefSeq Acc Id: XP_005391356   ⟸   XM_005391299
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005391358   ⟸   XM_005391301
- Peptide Label: isoform X3
- UniProtKB: A0A8C2WBT7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005391357   ⟸   XM_005391300
- Peptide Label: isoform X2
- Sequence:
Ensembl Acc Id: ENSCLAP00000024682   ⟸   ENSCLAT00000024920


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000016949 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000024920 ENTREZGENE
  ENSCLAT00000024920.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.110 UniProtKB/TrEMBL
InterPro J_dom_sf UniProtKB/TrEMBL
  Tim16 UniProtKB/TrEMBL
NCBI Gene Pam16 ENTREZGENE
PANTHER MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM16 UniProtKB/TrEMBL
  PTHR12388 UniProtKB/TrEMBL
Pfam Pam16 UniProtKB/TrEMBL
UniProt A0A8C2WBT7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-08-15 Pam16  presequence translocase associated motor 16    presequence translocase associated motor 16 homolog  Symbol and/or name change 5135510 APPROVED
2016-08-03 Pam16  presequence translocase associated motor 16 homolog    presequence translocase-associated motor 16 homolog (S. cerevisiae)  Symbol and/or name change 5135510 APPROVED