Pdia4 (protein disulfide isomerase family A member 4) - Rat Genome Database

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Gene: Pdia4 (protein disulfide isomerase family A member 4) Chinchilla lanigera
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Symbol: Pdia4
Name: protein disulfide isomerase family A member 4
RGD ID: 8896440
Description: ENCODES a protein that exhibits integrin binding (ortholog); protein disulfide isomerase activity (ortholog); protein-disulfide reductase activity (ortholog); INVOLVED IN blood coagulation, fibrin clot formation (ortholog); chaperone-mediated protein folding (ortholog); platelet aggregation (ortholog); PARTICIPATES IN codeine and morphine pharmacodynamics pathway; codeine and morphine pharmacokinetics pathway; etoposide pharmacodynamics pathway; FOUND IN cell surface (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum chaperone complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554914,344,874 - 4,360,205 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554914,344,874 - 4,360,205 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Pdia4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554914,344,874 - 4,360,205 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554914,344,874 - 4,360,205 (-)NCBIChiLan1.0ChiLan1.0
PDIA4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387149,003,051 - 149,028,505 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7149,003,062 - 149,028,662 (-)EnsemblGRCh38hg38GRCh38
GRCh377148,700,143 - 148,725,597 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 367148,331,087 - 148,356,715 (-)NCBINCBI36Build 36hg18NCBI36
Celera7143,370,993 - 143,396,607 (-)NCBICelera
Cytogenetic Map7q36.1NCBI
HuRef7142,778,950 - 142,804,531 (-)NCBIHuRef
CHM1_17148,708,552 - 148,734,184 (-)NCBICHM1_1
T2T-CHM13v2.07150,185,192 - 150,210,630 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27148,038,519 - 148,064,131 (-)NCBI
Pdia4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39647,773,075 - 47,790,446 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl647,773,075 - 47,790,364 (-)EnsemblGRCm39 Ensembl
GRCm38647,796,141 - 47,813,512 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl647,796,141 - 47,813,430 (-)EnsemblGRCm38mm10GRCm38
MGSCv37647,746,140 - 47,763,511 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36647,725,727 - 47,743,098 (-)NCBIMGSCv36mm8
Celera648,328,916 - 48,346,203 (-)NCBICelera
Cytogenetic Map6B2.3NCBI
cM Map622.94NCBI
Pdia4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8478,134,144 - 78,153,191 (-)NCBIGRCr8
mRatBN7.2476,803,198 - 76,822,245 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl476,803,198 - 76,822,107 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx482,015,477 - 82,034,526 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0477,789,815 - 77,808,864 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0476,231,277 - 76,250,326 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0477,470,636 - 77,489,535 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl477,470,636 - 77,489,535 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04142,140,946 - 142,159,845 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4475,929,398 - 75,948,299 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1476,205,527 - 76,224,429 (-)NCBI
Celera471,752,429 - 71,771,331 (-)NCBICelera
Cytogenetic Map4q24NCBI
PDIA4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26185,587,296 - 185,613,588 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1737,597,560 - 37,623,852 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07140,731,333 - 140,757,599 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17153,210,542 - 153,236,721 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7153,210,553 - 153,236,721 (-)Ensemblpanpan1.1panPan2
PDIA4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1161,797,537 - 1,818,877 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl161,797,552 - 1,818,251 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha162,896,760 - 2,918,061 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0161,601,971 - 1,623,305 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1161,588,802 - 1,610,117 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0161,448,287 - 1,469,581 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0161,452,161 - 1,473,485 (+)NCBIUU_Cfam_GSD_1.0
Pdia4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244051187,692,798 - 7,714,242 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365275,188,463 - 5,210,629 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365275,189,189 - 5,210,621 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PDIA4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9109,252,011 - 109,280,247 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19109,260,850 - 109,280,256 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29120,198,256 - 120,217,661 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PDIA4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.121117,574,932 - 117,601,896 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl21117,574,427 - 117,601,960 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607213,525,893 - 13,553,262 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pdia4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248006,723,548 - 6,742,024 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248006,723,567 - 6,742,024 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000001926   ⟹   ENSCLAP00000001883
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554914,344,874 - 4,360,205 (-)Ensembl
RefSeq Acc Id: XM_005404741   ⟹   XP_005404798
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554914,344,874 - 4,360,205 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005404798 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000001883
  ENSCLAP00000001883.1
RefSeq Acc Id: XP_005404798   ⟸   XM_005404741
- UniProtKB: A0A8C2UL91 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000001883   ⟸   ENSCLAT00000001926
Protein Domains
Thioredoxin


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000001392 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000001926 ENTREZGENE
  ENSCLAT00000001926.1 UniProtKB/TrEMBL
Gene3D-CATH Glutaredoxin UniProtKB/TrEMBL
InterPro Disulphide_isomerase UniProtKB/TrEMBL
  PDIA4_PDI_b UniProtKB/TrEMBL
  Prot_disulphide_isomerase UniProtKB/TrEMBL
  Protein_diS-isomerase_A4 UniProtKB/TrEMBL
  Thioredoxin-like_sf UniProtKB/TrEMBL
  Thioredoxin_CS UniProtKB/TrEMBL
  Thioredoxin_domain UniProtKB/TrEMBL
NCBI Gene Pdia4 ENTREZGENE
PANTHER PROTEIN DISULFIDE ISOMERASE UniProtKB/TrEMBL
  PROTEIN DISULFIDE-ISOMERASE A4 UniProtKB/TrEMBL
Pfam Thioredoxin UniProtKB/TrEMBL
  Thioredoxin_6 UniProtKB/TrEMBL
PIRSF Disulphide_isom_A4 UniProtKB/TrEMBL
PRINTS THIOREDOXIN UniProtKB/TrEMBL
PROSITE THIOREDOXIN_1 UniProtKB/TrEMBL
  THIOREDOXIN_2 UniProtKB/TrEMBL
Superfamily-SCOP SSF52833 UniProtKB/TrEMBL
UniProt A0A8C2UL91 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Pdia4  protein disulfide isomerase family A member 4    protein disulfide isomerase family A, member 4  Symbol and/or name change 5135510 APPROVED