Slc25a47 (solute carrier family 25 member 47) - Rat Genome Database

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Gene: Slc25a47 (solute carrier family 25 member 47) Chinchilla lanigera
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Symbol: Slc25a47
Name: solute carrier family 25 member 47
RGD ID: 8872761
Description: ENCODES a protein that exhibits acetyl-CoA transmembrane transporter activity (ortholog); NAD transmembrane transporter activity (ortholog); ASSOCIATED WITH hepatocellular carcinoma (ortholog); prostate cancer (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrial outer membrane (ortholog); mitochondrion (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: solute carrier family 25, member 47
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543821,408,652 - 21,413,445 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543821,406,270 - 21,413,946 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Slc25a47
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543821,408,652 - 21,413,445 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543821,406,270 - 21,413,946 (+)NCBIChiLan1.0ChiLan1.0
SLC25A47
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3814100,323,339 - 100,330,421 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl14100,323,339 - 100,330,421 (+)EnsemblGRCh38hg38GRCh38
GRCh3714100,789,676 - 100,796,758 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361499,859,432 - 99,866,468 (+)NCBINCBI36Build 36hg18NCBI36
Build 341499,859,431 - 99,866,468NCBI
Celera1480,844,304 - 80,851,341 (+)NCBICelera
Cytogenetic Map14q32.2NCBI
HuRef1480,971,027 - 80,978,064 (+)NCBIHuRef
CHM1_114100,727,449 - 100,734,485 (+)NCBICHM1_1
T2T-CHM13v2.01494,556,363 - 94,563,446 (+)NCBIT2T-CHM13v2.0
Slc25a47
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912108,815,740 - 108,822,741 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl12108,801,972 - 108,822,741 (+)EnsemblGRCm39 Ensembl
GRCm3812108,849,833 - 108,856,815 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12108,836,046 - 108,856,815 (+)EnsemblGRCm38mm10GRCm38
MGSCv3712110,089,339 - 110,095,025 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3612109,298,936 - 109,304,622 (+)NCBIMGSCv36mm8
Celera12110,089,936 - 110,095,631 (+)NCBICelera
Cytogenetic Map12F1NCBI
cM Map1259.65NCBI
Slc25a47
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86133,531,741 - 133,537,375 (+)NCBIGRCr8
mRatBN7.26127,767,365 - 127,773,000 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6127,767,305 - 127,773,005 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6127,890,369 - 127,896,003 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06128,185,415 - 128,191,049 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06127,544,781 - 127,550,416 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06132,762,306 - 132,767,940 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6132,762,280 - 132,768,379 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06141,932,382 - 141,938,016 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46133,192,144 - 133,197,778 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.16133,198,330 - 133,203,965 (+)NCBI
Celera6125,318,263 - 125,323,897 (+)NCBICelera
Cytogenetic Map6q32NCBI
SLC25A47
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v215101,458,295 - 101,483,417 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan114100,674,789 - 100,701,046 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01480,927,765 - 80,952,992 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.114100,258,385 - 100,265,491 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl14100,258,391 - 100,265,448 (+)Ensemblpanpan1.1panPan2
SLC25A47
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1868,602,525 - 68,607,364 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl868,602,662 - 68,606,875 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha868,121,285 - 68,126,096 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0868,886,399 - 68,891,210 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl868,886,178 - 68,890,947 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1868,548,276 - 68,553,086 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0868,614,426 - 68,619,237 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0869,011,866 - 69,016,682 (+)NCBIUU_Cfam_GSD_1.0
Slc25a47
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244086406,100,896 - 6,105,914 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366043,978,061 - 3,980,958 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366043,976,677 - 3,981,572 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC25A47
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl7121,192,433 - 121,210,374 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.17121,204,213 - 121,210,376 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27128,664,421 - 128,674,962 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103229692
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12478,285,089 - 78,292,562 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2478,285,593 - 78,292,773 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605365,426,727 - 65,431,443 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc25a47
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247343,817,097 - 3,821,680 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247343,816,570 - 3,821,437 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000023160   ⟹   ENSCLAP00000022944
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495543821,408,652 - 21,413,445 (+)Ensembl
RefSeq Acc Id: XM_005390431   ⟹   XP_005390488
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543821,406,270 - 21,413,946 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005390432   ⟹   XP_005390489
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543821,407,539 - 21,413,946 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005390488 (Get FASTA)   NCBI Sequence Viewer  
  XP_005390489 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000022944
  ENSCLAP00000022944.1
RefSeq Acc Id: XP_005390489   ⟸   XM_005390432
- Peptide Label: isoform X2
- UniProtKB: A0A8C2W6I8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005390488   ⟸   XM_005390431
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSCLAP00000022944   ⟸   ENSCLAT00000023160


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000015745 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000023160 ENTREZGENE
  ENSCLAT00000023160.1 UniProtKB/TrEMBL
Gene3D-CATH 1.50.40.10 UniProtKB/TrEMBL
InterPro Mit_carrier UniProtKB/TrEMBL
  Mitochondrial_Carrier UniProtKB/TrEMBL
  Mitochondrial_sb/sol_carrier UniProtKB/TrEMBL
  Mt_carrier_dom_sf UniProtKB/TrEMBL
NCBI Gene Slc25a47 ENTREZGENE
PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED UniProtKB/TrEMBL
  SOLUTE CARRIER FAMILY 25 MEMBER 47 UniProtKB/TrEMBL
Pfam Mito_carr UniProtKB/TrEMBL
PRINTS MITOCARRIER UniProtKB/TrEMBL
PROSITE SOLCAR UniProtKB/TrEMBL
Superfamily-SCOP SSF103506 UniProtKB/TrEMBL
UniProt A0A8C2W6I8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Slc25a47  solute carrier family 25 member 47    solute carrier family 25, member 47  Symbol and/or name change 5135510 APPROVED