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Gene: Scarb1 (scavenger receptor class B member 1) Chinchilla lanigera

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Symbol:

Scarb1

Name:

scavenger receptor class B member 1

RGD ID:

8871182

Description:

ENCODES a protein that exhibits amyloid-beta binding (ortholog); apolipoprotein A-I binding (ortholog); apolipoprotein binding (ortholog); INVOLVED IN aflatoxin metabolic process (ortholog); androgen biosynthetic process (ortholog); blood vessel endothelial cell migration (ortholog); PARTICIPATES IN retinol metabolic pathway; reverse cholesterol transport pathway; ASSOCIATED WITH Animal Mammary Neoplasms (ortholog); cannabis abuse (ortholog); carcinoma (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog); caveola (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

scavenger receptor class B, member 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955482	4,813,955 - 4,837,392 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955482	4,813,502 - 4,836,479 (+)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Animal Mammary Neoplasms (ISO)

cannabis abuse (ISO)

carcinoma (ISO)

Chemical and Drug Induced Liver Injury (ISO)

Cocaine-Related Disorders (ISO)

Coronary Disease (ISO)

end stage renal disease (ISO)

Experimental Mammary Neoplasms (ISO)

Follicular Cyst (ISO)

hepatitis C (ISO)

Hypercholesterolemia (ISO)

metabolic dysfunction-associated steatotic liver disease (ISO)

phencyclidine abuse (ISO)

renal cell carcinoma (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

aflatoxin metabolic process (ISO)

androgen biosynthetic process (ISO)

blood vessel endothelial cell migration (ISO)

cholesterol catabolic process (ISO)

cholesterol efflux (ISO)

cholesterol homeostasis (ISO)

cholesterol import (ISO)

cholesterol transport (ISO)

detection of lipopolysaccharide (ISO)

endothelial cell proliferation (ISO)

high-density lipoprotein particle clearance (ISO)

high-density lipoprotein particle remodeling (ISO)

intestinal lipid absorption (ISO)

lipid transport (ISO)

lipopolysaccharide transport (ISO)

low-density lipoprotein particle clearance (ISO)

phagocytosis, recognition (ISO)

phospholipid transport (ISO)

positive regulation of cholesterol storage (ISO)

positive regulation of nitric-oxide synthase activity (ISO)

positive regulation of triglyceride biosynthetic process (ISO)

recognition of apoptotic cell (ISO)

regulation of phagocytosis (ISO)

regulation of phosphatidylcholine catabolic process (ISO)

response to vitamin B3 (ISO)

reverse cholesterol transport (ISO)

transcytosis (ISO)

triglyceride homeostasis (ISO)

vitamin transmembrane transport (ISO)

Cellular Component

apical plasma membrane (ISO)

basolateral plasma membrane (ISO)

caveola (ISO)

cell surface (ISO)

cytoplasm (ISO)

intracellular membrane-bounded organelle (ISO)

lysosome (ISO)

membrane (ISO)

microvillus membrane (ISO)

plasma membrane (ISO)

Molecular Function

amyloid-beta binding (ISO)

apolipoprotein A-I binding (ISO)

apolipoprotein binding (ISO)

high-density lipoprotein particle binding (ISO)

high-density lipoprotein particle receptor activity (ISO)

identical protein binding (ISO)

lipopolysaccharide binding (ISO)

lipopolysaccharide immune receptor activity (ISO)

low-density lipoprotein particle binding (ISO)

phosphatidylserine binding (ISO)

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

retinol metabolic pathway (ISO)

reverse cholesterol transport pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species
2.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Scarb1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955482	4,813,955 - 4,837,392 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955482	4,813,502 - 4,836,479 (+)	NCBI	ChiLan1.0	ChiLan1.0

SCARB1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	124,776,856 - 124,863,864 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	124,776,856 - 124,882,668 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	125,261,402 - 125,348,410 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	123,828,127 - 123,914,472 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	12	123,787,055 - 123,873,214	NCBI
Celera	12	124,862,283 - 124,949,187 (-)	NCBI		Celera
Cytogenetic Map	12	q24.31	NCBI
HuRef	12	122,224,152 - 122,310,029 (-)	NCBI		HuRef
CHM1_1	12	125,083,775 - 125,169,604 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	12	124,782,134 - 124,869,001 (-)	NCBI		T2T-CHM13v2.0

Scarb1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	125,354,151 - 125,418,082 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	125,354,151 - 125,418,158 (-)	Ensembl		GRCm39 Ensembl
GRCm38	5	125,277,087 - 125,341,094 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	125,277,087 - 125,341,094 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	125,757,460 - 125,821,444 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	125,566,069 - 125,630,053 (-)	NCBI		MGSCv36	mm8
Celera	5	122,296,944 - 122,361,197 (-)	NCBI		Celera
Cytogenetic Map	5	G1.1	NCBI
cM Map	5	64.11	NCBI

Scarb1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	36,957,302 - 37,023,982 (+)	NCBI		GRCr8
mRatBN7.2	12	31,296,143 - 31,362,649 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	31,296,156 - 31,362,647 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	12	32,468,363 - 32,534,776 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	33,079,673 - 33,146,089 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	32,131,509 - 32,197,925 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	36,694,952 - 36,761,445 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	36,694,960 - 36,761,455 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	12	38,572,152 - 38,638,465 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	12	32,390,183 - 32,457,661 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	12	32,253,570 - 32,321,047 (+)	NCBI
Celera	12	32,988,597 - 33,054,666 (+)	NCBI		Celera
Cytogenetic Map	12	q15	NCBI

SCARB1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	132,858,215 - 132,987,046 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	132,782,925 - 132,944,486 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	122,293,803 - 122,455,314 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	126,651,077 - 126,698,506 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	126,659,532 - 126,694,767 (-)	Ensembl	panpan1.1		panPan2

SCARB1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	26	5,035,797 - 5,122,383 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	26	5,049,407 - 5,121,468 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	26	5,195,714 - 5,282,186 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	26	5,282,168 - 5,368,989 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	26	5,295,032 - 5,368,981 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	26	5,217,039 - 5,303,430 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	26	5,308,627 - 5,394,876 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	26	5,260,548 - 5,347,101 (+)	NCBI		UU_Cfam_GSD_1.0

Scarb1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	158,927,028 - 158,948,613 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936558	530,828 - 552,892 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936558	530,828 - 555,098 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SCARB1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	28,301,294 - 28,393,568 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	28,301,421 - 28,393,568 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	30,050,898 - 30,093,735 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SCARB1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	120,134,485 - 120,223,512 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	120,134,874 - 120,216,904 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666037	125,058,937 - 125,145,319 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Scarb1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624747	23,973,648 - 24,010,820 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624747	23,970,782 - 24,010,683 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005403004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005403005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005403006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005403007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013503708	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01057311	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBBH01183747	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCLAT00000018467 ⟹ ENSCLAP00000018288

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955482	4,813,955 - 4,837,392 (+)	Ensembl

Ensembl Acc Id:

ENSCLAT00000018468 ⟹ ENSCLAP00000018289

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955482	4,814,709 - 4,837,392 (+)	Ensembl

RefSeq Acc Id:

XM_005403004 ⟹ XP_005403061

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955482	4,814,473 - 4,835,808 (+)	NCBI

Sequence:

show sequence

AGGGCCCTGCAGTGCATGGCCGGAGGGTTGGGCGACATGAACGTGCGCGTGGACCCGAGCAGCC
TGTCCTTCAGCATGTGGAAGGAGATCCCCGTGCCCTTCTACATGTCCGTCTACTTCTTCGACGT
GGTCAACTCGGACGCGGTTCTGCAGGGCGCGGCGCCGGAGGTGCGGGAGCGCGGGCCCTACGTG
TACAGGCAGTTCAGGCACAAGAATAGCATCTCCTTCAACAACAACGACACGGTGTCCTTCCGGG
AGAGGTGCTCCTTCCAGTTCCAGCCCGAGAGGTCCCGCGGCTTGGAGAGCGACCACATCATGCT
GCCCAACATCCTGGTCCTGGCCGCCTCGACCATGATGGAGCACCGGCCCATGAGCCTGAAGCTG
CTGATGACCTTAATGCTCACCACCATGGGGCAGCGCGCCTTCATGAACCGCACGGTAGGCGAGG
TCATGTGGGGCTACGACGACCCGCTGCTGGACCTCATGAACAAGTACTTCCCCGGCACGCTGCC
CTTCAAGGGCAAGTTCGGGCTGTTTGCGGGGATGAACAACTCGGACTCCGGGCTCTTCACCGTG
TTCACAGGGGTGAAGAACCTCAGCCGCATCCACCTGCTGGACAAGTGGAACGGGCTCAGCAAGG
TCAACTACTGGCACTCGGACCAGTGCAACATGATCAACGGCACCTCCGGGCAGATGTGGCCGCC
GTTCATGACCCCCGAATCCTCGCTGGAGTTCTACAGTCCTGAGGCCTGCAGGTCCATGCGGCTC
GTCTACCAGGAGCAGGGCGTGTTCCAGGGCATCCCCACCTACCGCTTCGTGGCCCCTAACACCC
TGTTCGCCAACGGCTCCGTCTACCCGCCCAACGAGGGCTTCTGCCCATGCCTGGAGTCTGGCAT
CCAGAACGTCAGCACCTGCAGGTTCGGTGCGCCCCTCTTCCTCTCCCACCCGCACTTCTACAAC
GCCGACCCGGTCCTGGCGGAGAGGGTGCTCGGCCTGCACCCCAACGCGGAGGAGCACGCCCTCT
TCCTGGACATCCACCCGGTCACCGGGATCCCCATGAACTGCTCCGTGAAGCTGCAGCTCAGCCT
GTACATGAAAGCCATCAAGGGCATCGGGCAAACAGGGAAGATCCAGCCGGTGGTCCTGCCGCTG
CTGTGGTTTGCGCAGAGCGGGGCCATGGAGGGCGAGCCGCTCCGCACGTTCTACAGGCAGCTGG
TGCTGACCCCTAACATCCTCTACTACACTCAGTACGTGCTGCTGGCGCTGGGCAGCGCGCTGCT
GCTCATCCCGGTCGTCTACCAGGTCTGCAGACAGGAGAAGTGCTATTTATTTTGGAGTGGTAGT
AAAAAGGGCTCAGGCGCTAAGGCAGCCATGCAGGCCTACTCTGAATCCCTGATGACGTCCGCTC
CCAAGGGTGCCGTGCTGCAGGAGGCCCGGCTGTAGGGTCCCAAGGACGCCCTGGGCCAGCAAGG
CCAGTCCACCTGGTCGGAGCAGCCGCCCAGCCCCTGCACGCCCCTGCTGCAGGAGCCGC

hide sequence

RefSeq Acc Id:

XM_005403005 ⟹ XP_005403062

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955482	4,814,473 - 4,836,479 (+)	NCBI

Sequence:

show sequence

AGGGCCCTGCAGTGCATGGCCGGAGGGTTGGGCGACATGAACGTGCGCGTGGACCCGAGCAGCC
TGTCCTTCAGCATGTGGAAGGAGATCCCCGTGCCCTTCTACATGTCCGTCTACTTCTTCGACGT
GGTCAACTCGGACGCGGTTCTGCAGGGCGCGGCGCCGGAGGTGCGGGAGCGCGGGCCCTACGTG
TACAGGCAGTTCAGGCACAAGAATAGCATCTCCTTCAACAACAACGACACGGTGTCCTTCCGGG
AGAGGTGCTCCTTCCAGTTCCAGCCCGAGAGGTCCCGCGGCTTGGAGAGCGACCACATCATGCT
GCCCAACATCCTGGTCCTGGCCGCCTCGACCATGATGGAGCACCGGCCCATGAGCCTGAAGCTG
CTGATGACCTTAATGCTCACCACCATGGGGCAGCGCGCCTTCATGAACCGCACGGTAGGCGAGG
TCATGTGGGGCTACGACGACCCGCTGCTGGACCTCATGAACAAGTACTTCCCCGGCACGCTGCC
CTTCAAGGGCAAGTTCGGGCTGTTTGCGGGGATGAACAACTCGGACTCCGGGCTCTTCACCGTG
TTCACAGGGGTGAAGAACCTCAGCCGCATCCACCTGCTGGACAAGTGGAACGGGCTCAGCAAGG
TCAACTACTGGCACTCGGACCAGTGCAACATGATCAACGGCACCTCCGGGCAGATGTGGCCGCC
GTTCATGACCCCCGAATCCTCGCTGGAGTTCTACAGTCCTGAGGCCTGCAGGTCCATGCGGCTC
GTCTACCAGGAGCAGGGCGTGTTCCAGGGCATCCCCACCTACCGCTTCGTGGCCCCTAACACCC
TGTTCGCCAACGGCTCCGTCTACCCGCCCAACGAGGGCTTCTGCCCATGCCTGGAGTCTGGCAT
CCAGAACGTCAGCACCTGCAGGTTCGGTGCGCCCCTCTTCCTCTCCCACCCGCACTTCTACAAC
GCCGACCCGGTCCTGGCGGAGAGGGTGCTCGGCCTGCACCCCAACGCGGAGGAGCACGCCCTCT
TCCTGGACATCCACCCGGTCACCGGGATCCCCATGAACTGCTCCGTGAAGCTGCAGCTCAGCCT
GTACATGAAAGCCATCAAGGGCATCGGGCAAACAGGGAAGATCCAGCCGGTGGTCCTGCCGCTG
CTGTGGTTTGCGCAGAGCGGGGCCATGGAGGGCGAGCCGCTCCGCACGTTCTACAGGCAGCTGG
TGCTGACCCCTAACATCCTCTACTACACTCAGTACGTGCTGCTGGCGCTGGGCAGCGCGCTGCT
GCTCATCCCGGTCGTCTACCAGGTCTGCAGACAGGGTCCCAAGGACGCCCTGGGCCAGCAAGGC
CAGTCCACCTGGTCGGAGCAGCCGCCCAGCCCCTGCACGCCCCTGCTGCAGGAGCCGCTGCCCC
CGCAGCCCGCGGCCCGCGCCTGAGCCCACTGCACCCAGCCTGCCCGCGCGGGCCGAGCCGGGGA
CACTCAGGGACGGAGCCGCACCCGGGGCCCAGAAGAGGCTGGCGACGCGCGCTGCTCTGGAAGC
TTCTCCCAGCGGCCACAGCGGCCTGGGCGCCATGTCCCCTCCCTCGGGCACGCCCAGCCCAGCC
CATGTCACCAGCCCTTGACAGCTCTTGTTCCCGGTCCCTCCTGTCCTGCAGCACACATGCAGCC
CCACTGGCCACCTTCTGCACGGGACGGGCCACCGCACTGGGCCAGGCCGCGCCTCCGTGCCAAA
GCAGGGCTGTGGGGCTCAGGACGTGAGGGGACCAGGTGCCCTCAGCGGCTGCCCTCGCCCCACC
GTGGGCGCCGGGGTCCAGAGGAGCGCACAGCCCAGGCCGGAGTCCGGGTCCTTTTCCCCGGCCA
CCGACCACATCCTGTGTACTGAGCCGCCCCCAGCTCGCCGGGGCCGAGGGAGGGGCTGGGGCCT
GGCCTGGTGGTCCCTGGGCATCTCTAGGGAGGGGGGCCCTCTGCCCGGCTCCTGGCTCCTGGAC
GAGCCCCCATGTCTTTTCTACCAGAAGAGAAAGGAGTTTTACCATCTTACAACAAGCTCACCAT
GAAAGCAATAAACCTTTTACAGAAC

hide sequence

RefSeq Acc Id:

XM_005403006 ⟹ XP_005403063

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955482	4,815,077 - 4,835,808 (+)	NCBI

Sequence:

show sequence

AGGCTTTTGTTCTCGCTGTCGGCCTGCAGCCTCCTGAGCAGCCACTGCCCCGGGGCCTTTGCAC
TGGCTGGGGGCTCCATGGGGTGCACCCCACCCCCGCATGTCCGCATCTCTTGCCTCACATCGAA
CGTGCGCGTGGACCCGAGCAGCCTGTCCTTCAGCATGTGGAAGGAGATCCCCGTGCCCTTCTAC
ATGTCCGTCTACTTCTTCGACGTGGTCAACTCGGACGCGGTTCTGCAGGGCGCGGCGCCGGAGG
TGCGGGAGCGCGGGCCCTACGTGTACAGGCAGTTCAGGCACAAGAATAGCATCTCCTTCAACAA
CAACGACACGGTGTCCTTCCGGGAGAGGTGCTCCTTCCAGTTCCAGCCCGAGAGGTCCCGCGGC
TTGGAGAGCGACCACATCATGCTGCCCAACATCCTGGTCCTGGCCGCCTCGACCATGATGGAGC
ACCGGCCCATGAGCCTGAAGCTGCTGATGACCTTAATGCTCACCACCATGGGGCAGCGCGCCTT
CATGAACCGCACGGTAGGCGAGGTCATGTGGGGCTACGACGACCCGCTGCTGGACCTCATGAAC
AAGTACTTCCCCGGCACGCTGCCCTTCAAGGGCAAGTTCGGGCTGTTTGCGGGGATGAACAACT
CGGACTCCGGGCTCTTCACCGTGTTCACAGGGGTGAAGAACCTCAGCCGCATCCACCTGCTGGA
CAAGTGGAACGGGCTCAGCAAGGTCAACTACTGGCACTCGGACCAGTGCAACATGATCAACGGC
ACCTCCGGGCAGATGTGGCCGCCGTTCATGACCCCCGAATCCTCGCTGGAGTTCTACAGTCCTG
AGGCCTGCAGGTCCATGCGGCTCGTCTACCAGGAGCAGGGCGTGTTCCAGGGCATCCCCACCTA
CCGCTTCGTGGCCCCTAACACCCTGTTCGCCAACGGCTCCGTCTACCCGCCCAACGAGGGCTTC
TGCCCATGCCTGGAGTCTGGCATCCAGAACGTCAGCACCTGCAGGTTCGGTGCGCCCCTCTTCC
TCTCCCACCCGCACTTCTACAACGCCGACCCGGTCCTGGCGGAGAGGGTGCTCGGCCTGCACCC
CAACGCGGAGGAGCACGCCCTCTTCCTGGACATCCACCCGGTCACCGGGATCCCCATGAACTGC
TCCGTGAAGCTGCAGCTCAGCCTGTACATGAAAGCCATCAAGGGCATCGGGCAAACAGGGAAGA
TCCAGCCGGTGGTCCTGCCGCTGCTGTGGTTTGCGCAGAGCGGGGCCATGGAGGGCGAGCCGCT
CCGCACGTTCTACAGGCAGCTGGTGCTGACCCCTAACATCCTCTACTACACTCAGTACGTGCTG
CTGGCGCTGGGCAGCGCGCTGCTGCTCATCCCGGTCGTCTACCAGGTCTGCAGACAGGAGAAGT
GCTATTTATTTTGGAGTGGTAGTAAAAAGGGCTCAGGCGCTAAGGCAGCCATGCAGGCCTACTC
TGAATCCCTGATGACGTCCGCTCCCAAGGGTGCCGTGCTGCAGGAGGCCCGGCTGTAGGGTCCC
AAGGACGCCCTGGGCCAGCAAGGCCAGTCCACCTGGTCGGAGCAGCCGCCCAGCCCCTGCACGC
CCCTGCTGCAGGAGCCGC

hide sequence

RefSeq Acc Id:

XM_005403007 ⟹ XP_005403064

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955482	4,813,502 - 4,835,808 (+)	NCBI

Sequence:

show sequence

GGTTGCGTGGCTCACCCCTGGAAGCGCGCACCTGGCGGCTGTGGTGCTCCGTGCAGTCCTCTGC
CGGCCCCACCCGCTGGCCCAGCACCGTCCAGCTGCGGCCAGCTCCGCTGGGCTGGTCAGGCCTG
GCCTCGAGGAGGACGCCTGTTGTGGGTGGGGTTTGAACCTGGGCCTTGGGGCTCAGAGTCCGCC
CTGGCTGCGCCCCTCGGTGTGGAGAGGTGCCTTCCACGAGCTGGGCCCTGTGAAGGAGCGGTGA
CGCCCCTGCGCTGTCGTTTATCTCCCACGCCCCCAACGGGCCGTCTCCGCACGGCCGGGGCCTC
AGGTGGCCCAGCTTGCGCCCCCTGTCACCGAGTGTCTCAGACTCAGCTCACCGAGAGGGAAGGC
TCTGTGGGGCTTTGCCCCCACCCCCCGGCTCTCGAGAGGCCACACCCACCCCTTGAAGGCCGCA
GGCTGATGTGGGAGCCCCGAGGAGACTGGTCCTGTCTCAGGACCTCGTGTTTGAACGTGCGCGT
GGACCCGAGCAGCCTGTCCTTCAGCATGTGGAAGGAGATCCCCGTGCCCTTCTACATGTCCGTC
TACTTCTTCGACGTGGTCAACTCGGACGCGGTTCTGCAGGGCGCGGCGCCGGAGGTGCGGGAGC
GCGGGCCCTACGTGTACAGGCAGTTCAGGCACAAGAATAGCATCTCCTTCAACAACAACGACAC
GGTGTCCTTCCGGGAGAGGTGCTCCTTCCAGTTCCAGCCCGAGAGGTCCCGCGGCTTGGAGAGC
GACCACATCATGCTGCCCAACATCCTGGTCCTGGCCGCCTCGACCATGATGGAGCACCGGCCCA
TGAGCCTGAAGCTGCTGATGACCTTAATGCTCACCACCATGGGGCAGCGCGCCTTCATGAACCG
CACGGTAGGCGAGGTCATGTGGGGCTACGACGACCCGCTGCTGGACCTCATGAACAAGTACTTC
CCCGGCACGCTGCCCTTCAAGGGCAAGTTCGGGCTGTTTGCGGGGATGAACAACTCGGACTCCG
GGCTCTTCACCGTGTTCACAGGGGTGAAGAACCTCAGCCGCATCCACCTGCTGGACAAGTGGAA
CGGGCTCAGCAAGGTCAACTACTGGCACTCGGACCAGTGCAACATGATCAACGGCACCTCCGGG
CAGATGTGGCCGCCGTTCATGACCCCCGAATCCTCGCTGGAGTTCTACAGTCCTGAGGCCTGCA
GGTCCATGCGGCTCGTCTACCAGGAGCAGGGCGTGTTCCAGGGCATCCCCACCTACCGCTTCGT
GGCCCCTAACACCCTGTTCGCCAACGGCTCCGTCTACCCGCCCAACGAGGGCTTCTGCCCATGC
CTGGAGTCTGGCATCCAGAACGTCAGCACCTGCAGGTTCGGTGCGCCCCTCTTCCTCTCCCACC
CGCACTTCTACAACGCCGACCCGGTCCTGGCGGAGAGGGTGCTCGGCCTGCACCCCAACGCGGA
GGAGCACGCCCTCTTCCTGGACATCCACCCGGTCACCGGGATCCCCATGAACTGCTCCGTGAAG
CTGCAGCTCAGCCTGTACATGAAAGCCATCAAGGGCATCGGGCAAACAGGGAAGATCCAGCCGG
TGGTCCTGCCGCTGCTGTGGTTTGCGCAGAGCGGGGCCATGGAGGGCGAGCCGCTCCGCACGTT
CTACAGGCAGCTGGTGCTGACCCCTAACATCCTCTACTACACTCAGTACGTGCTGCTGGCGCTG
GGCAGCGCGCTGCTGCTCATCCCGGTCGTCTACCAGGTCTGCAGACAGGAGAAGTGCTATTTAT
TTTGGAGTGGTAGTAAAAAGGGCTCAGGCGCTAAGGCAGCCATGCAGGCCTACTCTGAATCCCT
GATGACGTCCGCTCCCAAGGGTGCCGTGCTGCAGGAGGCCCGGCTGTAGGGTCCCAAGGACGCC
CTGGGCCAGCAAGGCCAGTCCACCTGGTCGGAGCAGCCGCCCAGCCCCTGCACGCCCCTGCTGC
AGGAGCCGC

hide sequence

RefSeq Acc Id:

XM_013503708 ⟹ XP_013359162

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955482	4,814,473 - 4,833,735 (+)	NCBI

Sequence:

show sequence

AGGGCCCTGCAGTGCATGGCCGGAGGGTTGGGCGACATGAACGTGCGCGTGGACCCGAGCAGCC
TGTCCTTCAGCATGTGGAAGGAGATCCCCGTGCCCTTCTACATGTCCGTCTACTTCTTCGACGT
GGTCAACTCGGACGCGGTTCTGCAGGGCGCGGCGCCGGAGGTGCGGGAGCGCGGGCCCTACGTG
TACAGGCAGTTCAGGCACAAGAATAGCATCTCCTTCAACAACAACGACACGGTGTCCTTCCGGG
AGAGGTGCTCCTTCCAGTTCCAGCCCGAGAGGTCCCGCGGCTTGGAGAGCGACCACATCATGCT
GCCCAACATCCTGGTCCTGGCCGCCTCGACCATGATGGAGCACCGGCCCATGAGCCTGAAGCTG
CTGATGACCTTAATGCTCACCACCATGGGGCAGCGCGCCTTCATGAACCGCACGGTAGGCGAGG
TCATGTGGGGCTACGACGACCCGCTGCTGGACCTCATGAACAAGTACTTCCCCGGCACGCTGCC
CTTCAAGGGCAAGTTCGGGCTGTTTGCGGGGATGAACAACTCGGACTCCGGGCTCTTCACCGTG
TTCACAGGGGTGAAGAACCTCAGCCGCATCCACCTGCTGGACAAGTGGAACGGGCTCAGCAAGG
TCAACTACTGGCACTCGGACCAGTGCAACATGATCAACGGCACCTCCGGGCAGATGTGGCCGCC
GTTCATGACCCCCGAATCCTCGCTGGAGTTCTACAGTCCTGAGGCCTGCAGGTCCATGCGGCTC
GTCTACCAGGAGCAGGGCGTGTTCCAGGGCATCCCCACCTACCGCTTCGTGGCCCCTAACACCC
TGTTCGCCAACGGCTCCGTCTACCCGCCCAACGAGGGCTTCTGCCCATGCCTGGAGTCTGGCAT
CCAGAACGTCAGCACCTGCAGGTTCGGTGCGCCCCTCTTCCTCTCCCACCCGCACTTCTACAAC
GCCGACCCGGTCCTGGCGGAGAGGGTGCTCGGCCTGCACCCCAACGCGGAGGAGCACGCCCTCT
TCCTGGACATCCACCCGGTCACCGGGATCCCCATGAACTGCTCCGTGAAGCTGCAGCTCAGCCT
GTACATGAAAGCCATCAAGGGCATCGGGCAAACAGGGAAGATCCAGCCGGTGGTCCTGCCGCTG
CTGTGGTTTGCGCAGAGCGGGGCCATGGAGGGCGAGCCGCTCCGCACGTTCTACAGGCAGCTGG
TGCTGACCCCTAACATCCTCTACTACACTCAGTACGTGCTGCTGGCGCTGGGCAGCGCGCTGCT
GCTCATCCCGGTCGTCTACCAGGTCTGCAGACAGGAGAAGTGCTATTTATTTTGGAGTGGTAGT
AAAAAGGGCTCAGGCGCTAAGGCAGCCATGCAGGCCTACTCTGAATCCCTGATGACGTCCGCTC
CCAAGGGTGCCGTGCTGCAGGAGGCCCGGCTGTAGGTGGGTACCAGGTAACCGCCCTCTCGTCC
TCCCGCGGCCGCTGGTCCCCGCGGTGACCACTCGCTGCTCGGGGCTCTGTCATCAGTTCCCAGG
GAGTGCAGTGCTTTGATCCCTGGGCCACTCAGGGGTGCTGGGCTCTGTCCGTTTGCAAGATCAG
CTTAGAAGGGCAGGGCCAAGCCCAGACCTCACGCCTGTGCGGTAGACCCTGCAGGAAGCTTCCC
AGAGCTCGGCTCCTGAGACGGACTCCTGGGAGCCCAAGAGTCTCTGGGGCTTGGGTGATGGATG
AAACCTGGGCTTTCTCGCAGAGCTCTACCCCAGCCCTTTGCATTTTTATTTTGAGGCAGGGTCT
CA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005403061	(Get FASTA)	NCBI Sequence Viewer
	XP_005403062	(Get FASTA)	NCBI Sequence Viewer
	XP_005403063	(Get FASTA)	NCBI Sequence Viewer
	XP_005403064	(Get FASTA)	NCBI Sequence Viewer
	XP_013359162	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000018288
	ENSCLAP00000018288.1
	ENSCLAP00000018289
	ENSCLAP00000018289.1

RefSeq Acc Id:	XP_005403064 ⟸ XM_005403007
- Peptide Label:	isoform X4
- UniProtKB:	A0A8C2VQX0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MWEPRGDWSCLRTSCLNVRVDPSSLSFSMWKEIPVPFYMSVYFFDVVNSDAVLQGAAPEVRERG PYVYRQFRHKNSISFNNNDTVSFRERCSFQFQPERSRGLESDHIMLPNILVLAASTMMEHRPMS LKLLMTLMLTTMGQRAFMNRTVGEVMWGYDDPLLDLMNKYFPGTLPFKGKFGLFAGMNNSDSGL FTVFTGVKNLSRIHLLDKWNGLSKVNYWHSDQCNMINGTSGQMWPPFMTPESSLEFYSPEACRS MRLVYQEQGVFQGIPTYRFVAPNTLFANGSVYPPNEGFCPCLESGIQNVSTCRFGAPLFLSHPH FYNADPVLAERVLGLHPNAEEHALFLDIHPVTGIPMNCSVKLQLSLYMKAIKGIGQTGKIQPVV LPLLWFAQSGAMEGEPLRTFYRQLVLTPNILYYTQYVLLALGSALLLIPVVYQVCRQEKCYLFW SGSKKGSGAKAAMQAYSESLMTSAPKGAVLQEARL hide sequence

RefSeq Acc Id:

XP_005403062 ⟸ XM_005403005

- Peptide Label:

isoform X2

- Sequence:

show sequence

MAGGLGDMNVRVDPSSLSFSMWKEIPVPFYMSVYFFDVVNSDAVLQGAAPEVRERGPYVYRQFR
HKNSISFNNNDTVSFRERCSFQFQPERSRGLESDHIMLPNILVLAASTMMEHRPMSLKLLMTLM
LTTMGQRAFMNRTVGEVMWGYDDPLLDLMNKYFPGTLPFKGKFGLFAGMNNSDSGLFTVFTGVK
NLSRIHLLDKWNGLSKVNYWHSDQCNMINGTSGQMWPPFMTPESSLEFYSPEACRSMRLVYQEQ
GVFQGIPTYRFVAPNTLFANGSVYPPNEGFCPCLESGIQNVSTCRFGAPLFLSHPHFYNADPVL
AERVLGLHPNAEEHALFLDIHPVTGIPMNCSVKLQLSLYMKAIKGIGQTGKIQPVVLPLLWFAQ
SGAMEGEPLRTFYRQLVLTPNILYYTQYVLLALGSALLLIPVVYQVCRQGPKDALGQQGQSTWS
EQPPSPCTPLLQEPLPPQPAARA

hide sequence

RefSeq Acc Id:

XP_005403061 ⟸ XM_005403004

- Peptide Label:

isoform X1

- Sequence:

show sequence

MAGGLGDMNVRVDPSSLSFSMWKEIPVPFYMSVYFFDVVNSDAVLQGAAPEVRERGPYVYRQFR
HKNSISFNNNDTVSFRERCSFQFQPERSRGLESDHIMLPNILVLAASTMMEHRPMSLKLLMTLM
LTTMGQRAFMNRTVGEVMWGYDDPLLDLMNKYFPGTLPFKGKFGLFAGMNNSDSGLFTVFTGVK
NLSRIHLLDKWNGLSKVNYWHSDQCNMINGTSGQMWPPFMTPESSLEFYSPEACRSMRLVYQEQ
GVFQGIPTYRFVAPNTLFANGSVYPPNEGFCPCLESGIQNVSTCRFGAPLFLSHPHFYNADPVL
AERVLGLHPNAEEHALFLDIHPVTGIPMNCSVKLQLSLYMKAIKGIGQTGKIQPVVLPLLWFAQ
SGAMEGEPLRTFYRQLVLTPNILYYTQYVLLALGSALLLIPVVYQVCRQEKCYLFWSGSKKGSG
AKAAMQAYSESLMTSAPKGAVLQEARL

hide sequence

RefSeq Acc Id:	XP_005403063 ⟸ XM_005403006
- Peptide Label:	isoform X3
- UniProtKB:	A0A8C2VTU5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGCTPPPHVRISCLTSNVRVDPSSLSFSMWKEIPVPFYMSVYFFDVVNSDAVLQGAAPEVRERG PYVYRQFRHKNSISFNNNDTVSFRERCSFQFQPERSRGLESDHIMLPNILVLAASTMMEHRPMS LKLLMTLMLTTMGQRAFMNRTVGEVMWGYDDPLLDLMNKYFPGTLPFKGKFGLFAGMNNSDSGL FTVFTGVKNLSRIHLLDKWNGLSKVNYWHSDQCNMINGTSGQMWPPFMTPESSLEFYSPEACRS MRLVYQEQGVFQGIPTYRFVAPNTLFANGSVYPPNEGFCPCLESGIQNVSTCRFGAPLFLSHPH FYNADPVLAERVLGLHPNAEEHALFLDIHPVTGIPMNCSVKLQLSLYMKAIKGIGQTGKIQPVV LPLLWFAQSGAMEGEPLRTFYRQLVLTPNILYYTQYVLLALGSALLLIPVVYQVCRQEKCYLFW SGSKKGSGAKAAMQAYSESLMTSAPKGAVLQEARL hide sequence

RefSeq Acc Id:

XP_013359162 ⟸ XM_013503708

- Peptide Label:

isoform X1

- Sequence:

show sequence

MAGGLGDMNVRVDPSSLSFSMWKEIPVPFYMSVYFFDVVNSDAVLQGAAPEVRERGPYVYRQFR
HKNSISFNNNDTVSFRERCSFQFQPERSRGLESDHIMLPNILVLAASTMMEHRPMSLKLLMTLM
LTTMGQRAFMNRTVGEVMWGYDDPLLDLMNKYFPGTLPFKGKFGLFAGMNNSDSGLFTVFTGVK
NLSRIHLLDKWNGLSKVNYWHSDQCNMINGTSGQMWPPFMTPESSLEFYSPEACRSMRLVYQEQ
GVFQGIPTYRFVAPNTLFANGSVYPPNEGFCPCLESGIQNVSTCRFGAPLFLSHPHFYNADPVL
AERVLGLHPNAEEHALFLDIHPVTGIPMNCSVKLQLSLYMKAIKGIGQTGKIQPVVLPLLWFAQ
SGAMEGEPLRTFYRQLVLTPNILYYTQYVLLALGSALLLIPVVYQVCRQEKCYLFWSGSKKGSG
AKAAMQAYSESLMTSAPKGAVLQEARL

hide sequence

Ensembl Acc Id:

ENSCLAP00000018288 ⟸ ENSCLAT00000018467

Ensembl Acc Id:

ENSCLAP00000018289 ⟸ ENSCLAT00000018468

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000012537	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000018467	ENTREZGENE
	ENSCLAT00000018467.1	UniProtKB/TrEMBL
	ENSCLAT00000018468	ENTREZGENE
	ENSCLAT00000018468.1	UniProtKB/TrEMBL
InterPro	CD36_fam	UniProtKB/TrEMBL
NCBI Gene	Scarb1	ENTREZGENE
PANTHER	PTHR11923	UniProtKB/TrEMBL
	SCAVENGER RECEPTOR CLASS B MEMBER 1	UniProtKB/TrEMBL
Pfam	CD36	UniProtKB/TrEMBL
PRINTS	CD36FAMILY	UniProtKB/TrEMBL
UniProt	A0A8C2VQX0	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C2VTU5	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-08-16	Scarb1	scavenger receptor class B member 1		scavenger receptor class B, member 1	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

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